Merge branch 'master' into ci
* master: (120 commits) Fix vignette error Bump version number add back libgsl-dev, if zinbwave is to be installed also install suggested packages on travis in order to be able to run all tests and examples moving zinbwave to suggests and removing apt installation of gsl Fix zinbwave installation error Bioconductor 3.6 release add back all checks remove comma temporarily reduce build time added apt-get dependency for zinbwave Add zimbwave to imports bump x.y.z versions to odd y after creation of RELEASE_3_6 branch bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch Version 1.1.8 Update lun2 reference Update citation Add BASiCS to lists Run checks Convert to SingleCellExperiment ...
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- .Rbuildignore 5 additions, 1 deletion.Rbuildignore
- .travis.yml 8 additions, 5 deletions.travis.yml
- DESCRIPTION 27 additions, 21 deletionsDESCRIPTION
- NAMESPACE 40 additions, 16 deletionsNAMESPACE
- NEWS.md 104 additions, 33 deletionsNEWS.md
- R/AllClasses.R 246 additions, 25 deletionsR/AllClasses.R
- R/BASiCS-estimate.R 142 additions, 0 deletionsR/BASiCS-estimate.R
- R/BASiCS-simulate.R 139 additions, 0 deletionsR/BASiCS-simulate.R
- R/BASiCSParams-methods.R 125 additions, 0 deletionsR/BASiCSParams-methods.R
- R/MFAParams-methods.R 52 additions, 0 deletionsR/MFAParams-methods.R
- R/PhenoParams-methods.R 79 additions, 0 deletionsR/PhenoParams-methods.R
- R/SCDDParams-methods.R 9 additions, 9 deletionsR/SCDDParams-methods.R
- R/SCE-functions.R 38 additions, 38 deletionsR/SCE-functions.R
- R/SplatParams-methods.R 41 additions, 11 deletionsR/SplatParams-methods.R
- R/ZINBParams-methods.R 127 additions, 0 deletionsR/ZINBParams-methods.R
- R/compare.R 258 additions, 146 deletionsR/compare.R
- R/listSims.R 35 additions, 10 deletionsR/listSims.R
- R/lun-estimate.R 5 additions, 5 deletionsR/lun-estimate.R
- R/lun-simulate.R 25 additions, 22 deletionsR/lun-simulate.R
- R/lun2-estimate.R 18 additions, 7 deletionsR/lun2-estimate.R
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