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BioCellGen-public
sirplus
Commits
59e8f0fd
Commit
59e8f0fd
authored
7 years ago
by
Luke Zappia
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Bioconductor 3.5 release
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DESCRIPTION
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DESCRIPTION
NEWS.md
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NEWS.md
README.md
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DESCRIPTION
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Package: splatter
Type: Package
Title: Simple Simulation of Single-cell RNA Sequencing Data
Version:
0.99.16
Date: 2017-04-2
3
Version:
1.0.0
Date: 2017-04-2
8
Author: Luke Zappia
Authors@R:
c(person("Luke", "Zappia", role = c("aut", "cre"),
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NEWS.md
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# 1.0.0
*
Bioconductor 3.5 release
# 0.99.15
*
Add summariseDiff function
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README.md
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@@ -14,15 +14,15 @@ data. Splatter provides a common interface to multiple simulations that have:
*
Functions for simulating counts using those parameters
Splatter is built on top of
[
`scater`
][
scater
]
and stores simulations in
`SCESet`
objects.
`SCESet`
objects. Splatter also has functions for comparing simulations and real
datasets.
## Installation.
### Development version
Splatter has been accepted into the development version of
[
Bioconductor
][
bioc
]
and hence requires the development version of R (>=3.4) and the development
version of Bioconductor (3.5).
Splatter has been accepted into the latest version of
[
Bioconductor
][
bioc
]
and hence requires the latest version of R (>=3.4).
If you have these installed Splatter can be installed from Bioconductor using
`biocLite`
:
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@@ -43,13 +43,6 @@ aren't required for core functionality). Building the vignette may sometimes
fail when run from the command line, if this happens try running the install
command in RStudio.
### Release version
The last version of Splatter that is compatible with the current version of
R (3.3) is v0.99.0 which can be downloaded
[
here
][
rel33
]
. There are no
significant changes to functionality and this version should be fine for most
users until the next R/Bioconductor release (in approximately April 2017).
## Getting started
Once installed the best place to get started is the vignette. For most users
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@@ -69,4 +62,3 @@ This is a detailed document that introduces the main features of Splatter.
[
contrib
]:
https://github.com/Bioconductor/Contributions/issues/209
[
bioc
]:
https://bioconductor.org/packages/devel/bioc/html/splatter.html
[
vignette
]:
https://bioconductor.org/packages/devel/bioc/vignettes/splatter/inst/doc/splatter.html
[
rel33
]:
https://github.com/Oshlack/splatter/releases/tag/v0.99.0
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