Fix parameter passing bug in scDDEstimate

DESCRIPTION

 Package: splatter
 Type: Package
 Title: Simple Simulation of Single-cell RNA Sequencing Data
-Version: 1.3.2
-Date: 2018-01-31
+Version: 1.3.3
+Date: 2018-03-27
 Author: Luke Zappia
 Authors@R:
     c(person("Luke", "Zappia", role = c("aut", "cre"),

NEWS.md

+## Version 1.3.3 (2018-03-27)
+
+* Fix parameter passing bug in scDDEstimate
+
 ## Version 1.3.2 (2018-01-31)
 
 * Fix QC names that have been changed in scater

R/scDD-estimate.R

@@ -30,7 +30,7 @@
 #' data("sc_example_counts")
 #'
 #' conditions <- sample(1:2, ncol(sc_example_counts), replace = TRUE)
-#' params <- scDDEstimate(sc_example_counts, conditions)
+#' params <- scDDEstimate(sc_example_counts, conditions = conditions)
 #' params
 #' }
 #' @importFrom BiocParallel SerialParam
@@ -61,7 +61,8 @@ scDDEstimate.matrix <- function(counts, params = newSCDDParams(),
 
     counts <- SingleCellExperiment(assays = list(counts = counts),
                                    colData = data.frame(condition = conditions))
-    scDDEstimate.default(counts, "condition", params, verbose, BPPARAM)
+    scDDEstimate.default(counts, params, verbose, BPPARAM,
+                         condition = "condition")
 }
 
 #' @rdname scDDEstimate
@@ -71,7 +72,8 @@ scDDEstimate.SingleCellExperiment <- function(counts,
                                               verbose = TRUE,
                                               BPPARAM = SerialParam(),
                                               condition = "condition", ...) {
-    scDDEstimate.default(counts, condition, params, verbose, BPPARAM)
+    scDDEstimate.default(counts, params, verbose, BPPARAM,
+                         condition = condition)
 }
 
 #' @rdname scDDEstimate

man/scDDEstimate.Rd

@@ -58,7 +58,7 @@ library(scater)
 data("sc_example_counts")
 
 conditions <- sample(1:2, ncol(sc_example_counts), replace = TRUE)
-params <- scDDEstimate(sc_example_counts, conditions)
+params <- scDDEstimate(sc_example_counts, conditions = conditions)
 params
 }
 }