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## [41] xml2_1.2.0 beeswarm_0.2.3
## [43] fitdistrplus_1.0-9 tools_3.5.0
## [45] stringr_1.3.1 Rhdf5lib_1.3.1
## [47] munsell_0.5.0 locfit_1.5-9.1
## [49] bindrcpp_0.2.2 akima_0.6-2
## [51] compiler_3.5.0 pkgdown_1.1.0
## [53] rlang_0.2.1 rhdf5_2.25.4
## [55] grid_3.5.0 RCurl_1.95-4.11
## [57] rstudioapi_0.7 labeling_0.3
## [59] bitops_1.0-6 rmarkdown_1.10
## [61] gtable_0.2.0 roxygen2_6.1.0
## [63] reshape2_1.4.3 R6_2.2.2
## [65] gridExtra_2.3 knitr_1.20
## [67] dplyr_0.7.6 bindr_0.1.1
## [69] commonmark_1.5 rprojroot_1.3-2
## [71] desc_1.2.0 stringi_1.2.4
## [73] ggbeeswarm_0.6.0 Rcpp_0.12.18
## [75] tidyselect_0.2.4 xfun_0.3</code></pre>
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<a href="#tocnav" class="anchor"></a>Contents</h2>
<ul class="nav nav-pills nav-stacked">
<li><a href="#installation">Installation</a></li>
<li><a href="#quickstart">Quickstart</a></li>
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<a href="#the-splat-simulation">The Splat simulation</a><ul class="nav nav-pills nav-stacked">
<li><a href="#parameters">Parameters</a></li>
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<a href="#the-splatparams-object">The <code>SplatParams</code> object</a><ul class="nav nav-pills nav-stacked">
<li><a href="#getting-and-setting">Getting and setting</a></li>
</ul>
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<li><a href="#estimating-parameters">Estimating parameters</a></li>
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<a href="#simulating-counts">Simulating counts</a><ul class="nav nav-pills nav-stacked">
<li><a href="#simulating-groups">Simulating groups</a></li>
<li><a href="#simulating-paths">Simulating paths</a></li>
<li><a href="#batch-effects">Batch effects</a></li>
<li><a href="#convenience-functions">Convenience functions</a></li>
</ul>
</li>
<li><a href="#other-simulations">Other simulations</a></li>
<li><a href="#other-expression-values">Other expression values</a></li>
<li>
<a href="#comparing-simulations-and-real-data">Comparing simulations and real data</a><ul class="nav nav-pills nav-stacked">
<li><a href="#comparing-differences">Comparing differences</a></li>
<li><a href="#making-panels">Making panels</a></li>
</ul>
</li>
<li><a href="#citing-splatter">Citing Splatter</a></li>
<li><a href="#session-information">Session information</a></li>
</ul>
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<p>Developed by Luke Zappia, Belinda Phipson, Alicia Oshlack.</p>
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