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  • 10x-simulation-tweaks
  • master default protected
  • gb-accepted
  • natbt
  • biorxiv1
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Created with Raphaël 2.2.023Nov212021Jun18171412111014May9Sep130Aug2921Jul181211823Jun20May11104228Apr27262211128Mar22161510985123Feb18109872131Jan2721201922Dec211710763129Nov28Sep262423222127Aug21201918874229Jul2625242322212019151329Jun26242131May13Apr12986531Mar29282716125Feb2219171615109127Jan10Dec8725OctAccount for edge case in lm methodAdd analysis of summated set performanceRemove unneeded analysis filesImprove specification of reticulate pythonRemove out of date fileGB resubmission July 2023Add log fold-change calculation to SMaSHEnsure expert marker genes are preserved in the blood datasetsAdd blood datasets expert analysis plotsDraft additional concordance analysisUpdate package coloursUpdate implementation quality analysisAdd draft of dataset characteristic section analysisAdd blood datasets cell types to run-cepo functionAlso add new datasets to simulation comparisonsAdd new datasets to simulation comparisonAdd new methods to plot-utils.RAdd Venice methodAdd code to run smash methodAdd blood datasets to pred-perf comparisonAdd 'blood' datasetsAdd cell type difficulty analysisAdd/alter code to generate poster figuresAdd scoreMarkers() median AUCUpdate final figuresBuild site.Update websiteFlip ranking of 'rank' metricsBuild site.Update all analysesBuild site.Add more simulation validation analysisBuild site.Add SVM classifierUpdate concordance analysisAdd COSG to plot method listAdd new methods to plot-utilsCorrect code to run COSGAdd code for SVM classifierAdd code to run scran::scoreMarkers