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  • 10x-simulation-tweaks
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Created with Raphaël 2.2.01Jan31Dec294123Nov212021Jun18171412111014May9Sep130Aug2921Jul181211823Jun20May11104228Apr27262211128Mar22161510985123Feb18109872131Jan2721201922Dec211710763129Nov28Sep262423222127Aug21201918874229Jul2625242322212019151329Jun26242131May13Apr12986531Mar29282716125Feb2219171615109127Jan10Dec8725OctBuild site.gb-accepted mas…gb-accepted masterTweak websiteworkflowr::wflow_remove("analysis/zhao-data.Rmd")workflowr::wflow_remove("analysis/log-fc-analysis.Rmd")workflowr::wflow_remove("analysis/ss3-pbmc-analysis.Rmd")workflowr::wflow_remove("analysis/wilcox-t-test-case-study.Rmd")workflowr::wflow_remove("analysis/direction-selected-analysis.Rmd")workflowr::wflow_remove("analysis/number-selected-analysis.Rmd")Remove obselete files in public/Delete obselete fileBuild site.Implement revisionsChange license to MITRemove large filesMore changes for revisionsRemove unneeded fileAdd new 'maximum sum' classifier analysisAdd better plotting for stability simulation resultsUpdate modulesAdd code to run stability simualtionsAccount for edge case in lm methodAdd analysis of summated set performanceRemove unneeded analysis filesImprove specification of reticulate pythonRemove out of date fileGB resubmission July 2023Add log fold-change calculation to SMaSHEnsure expert marker genes are preserved in the blood datasetsAdd blood datasets expert analysis plotsDraft additional concordance analysisUpdate package coloursUpdate implementation quality analysisAdd draft of dataset characteristic section analysisAdd blood datasets cell types to run-cepo functionAlso add new datasets to simulation comparisonsAdd new datasets to simulation comparisonAdd new methods to plot-utils.RAdd Venice methodAdd code to run smash methodAdd blood datasets to pred-perf comparison