Commits · ca82ce0376f0d272dfbf5135342387dfeb6cd8d9 · BioCellGen-public / MAGE_2020_Marker-Gene-Benchmarking · GitLab

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Feb 16, 2021
- Build site. · ca82ce03
  Jeffrey Pullin authored 4 years ago
  
  ca82ce03
- Add new marker gene type analysis and update FDR + TPR · 63bce665
  Jeffrey Pullin authored 4 years ago
  
  analysis to use the new types
  63bce665
- Add first draft of null simulations · cd13a465
  Jeffrey Pullin authored 4 years ago
  
  NB: Not run
  cd13a465
- Add new function to find 'semi unique' marker genes · 3be14897
  Jeffrey Pullin authored 4 years ago
  
  3be14897
- Rename file to relfect focus on types of marker genes · c947596b
  Jeffrey Pullin authored 4 years ago
  
  c947596b
Feb 15, 2021
- Switch to using unique marker genes · 27916e78
  Jeffrey Pullin authored 4 years ago
  
  splatter-marker-genes.Rmd explores what type of marker genes can be simulated with splatter
  27916e78
- Add more documentation to top genes functions · ea656946
  Jeffrey Pullin authored 4 years ago
  
  ea656946
Feb 10, 2021
- Update Snakefile to work from cluster · d4682c47
  Jeffrey Pullin authored 4 years ago
  
  d4682c47
- Use three simulation replicates · 1a88fe8e
  Jeffrey Pullin authored 4 years ago
  
  1a88fe8e
- Fix typo · b8d68eda
  Jeffrey Pullin authored 4 years ago
  
  b8d68eda
- Update README · f1159d02
  Jeffrey Pullin authored 4 years ago
  
  f1159d02
- Add gitlab CI · d899e545
  Jeffrey Pullin authored 4 years ago
  
  d899e545
- Delete old file · 5f8009e8
  Jeffrey Pullin authored 4 years ago
  
  5f8009e8
- Build site. · 2863555c
  Jeffrey Pullin authored 4 years ago
  
  2863555c
- Add workflowr website · 1ad9d6de
  Jeffrey Pullin authored 4 years ago
  
  1ad9d6de
- Update website theme · 018a6e0f
  Jeffrey Pullin authored 4 years ago
  
  018a6e0f
- Refactor helpers into separate file · e9fd2e51
  Jeffrey Pullin authored 4 years ago
  
  e9fd2e51
Feb 09, 2021
- Update 9/2/2021 · ffe660ce
  Jeffrey Pullin authored 4 years ago
  
  ffe660ce
Feb 01, 2021
- Add more concordance analysis · 4df6f4ca
  Jeffrey Pullin authored 4 years ago
  
  4df6f4ca
Jan 27, 2021
- Try alternate method for finding marker genes · 4599967e
  Jeffrey Pullin authored 4 years ago
  
  4599967e
- Updates 27/1/2020 · 5cbada5c
  Jeffrey Pullin authored 4 years ago
  
  5cbada5c
- Merge branch 'master' of gitlab.svi.edu.au:biocellgen-private/mage_2020_marker-gene-benchmarking · d4759f9d
  Jeffrey Pullin authored 4 years ago
  
  d4759f9d
- Update 11/12/2020 · 8eb9b1fa
  Jeffrey Pullin authored 4 years ago
  
  8eb9b1fa
- Add new notes · 70ebe49c
  Jeffrey Pullin authored 4 years ago
  
  70ebe49c
Dec 10, 2020
- Update 10/12/2020 · ce84d92d
  Jeffrey Pullin authored 4 years ago
  
  ce84d92d
- Updates on 9/12/2020 · c274743f
  Jeffrey Pullin authored 4 years ago
  
  c274743f
Dec 08, 2020
- Update 8/12/2020 · e1ef7494
  Jeffrey Pullin authored 4 years ago
  
  e1ef7494
Dec 07, 2020
- Add initial draft of simulation code · eb6819eb
  Jeffrey Pullin authored 4 years ago
  
  eb6819eb
- Update analysis · 329fa571
  Jeffrey Pullin authored 4 years ago
  
  329fa571
- Update notes · 05efe431
  Jeffrey Pullin authored 4 years ago
  
  05efe431
- Add wrapper functions for scanpy and Seurat · 269e0876
  Jeffrey Pullin authored 4 years ago
  
  269e0876
Oct 25, 2020
- Add local .Renviron to .gitignore · 6425ab67
  Jeffrey Pullin authored 4 years ago
  
  6425ab67
- Add preliminary analysis · 4ffcef4a
  Jeffrey Pullin authored 4 years ago
  
  4ffcef4a
- Add more thoughts · b6d217b2
  Jeffrey Pullin authored 4 years ago
  
  b6d217b2
- Add initial thoughts · 5b01a779
  Jeffrey Pullin authored 4 years ago
  
  5b01a779
- Use RStudio · fb02fb91
  Jeffrey Pullin authored 4 years ago
  
  fb02fb91
- Initial commit · 7971ea23
  Jeffrey Pullin authored 4 years ago
  
  7971ea23