Turn off simulation of outlier genes

code/simulate-data.R

@@ -62,6 +62,8 @@ params <- setParam(params, "batchCells", sim_pars$batchCells)
 params <- setParam(params, "seed", sim_pars$seed)
 params <- setParam(params, "de.facLoc", sim_pars$de.facLoc)
 params <- setParam(params, "de.facScale", sim_pars$de.facScale)
+# Turn off outlier genes to simplify the selection of true marker genes.
+params <- setParam(params, "out.prob", 0)
 # Restrict the number of genes in the simulated datasets to not destroy the cluster...
 params <- setParam(params, "nGenes", 2000)