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Commit d3f74e55 authored by Jeffrey Pullin's avatar Jeffrey Pullin
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Remove altExps for the citesseq data

fixing issue with Seurat
parent b734b9d8
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......@@ -25,6 +25,10 @@ dec_citeseq <- modelGeneVarByPoisson(citeseq)
top_citeseq <- getTopHVGs(dec_citeseq, n = 2000)
citeseq <- citeseq[top_citeseq, ]
# Remove the alternate experiment which causes problems when the Seurat methods
# are used.
altExp(citeseq, "ADT") <- NULL
# All cluster labels (not annotated).
colLabels(citeseq) <- factor(citeseq$RNA_snn_res.0.2)
......
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