Add blood datasets cell types to run-cepo function

code/run-cepo.R

@@ -107,6 +107,23 @@ run_cepo <- function(sce, pars) {
       "noncycling.ASC" = "noncycling ASC",
       "TCL1A..naive.B" = "TCL1A+ naive B",
       "ZBTB32..mem.B" = "ZBTB32+ mem B",
+      # Blood datasets
+      "CD16..NK.cells" = "CD16+ NK cells",
+      "Classical.monocytes" = "Classical monocytes",
+      "Cycling.immune.mix" = "Cycling immune mix",
+      "MAIT.cells" = "MAIT cells",
+      "Megakaryocytes.platelets" = "Megakaryocytes/platelets",
+      "Memory.B.cells" = "Memory B cells",
+      "Non.classical.monocytes" = "Non-classical monocytes",
+      "Non.switched.memory.B.cells" = "Non-switched memory B cells",
+      "Regulatory.T.cells" = "Regulatory T cells",
+      "Switched.memory.B.cells" = "Switched memory B cells",
+      "Tcm.Naive.cytotoxic.T.cells" = "Tcm/Naive cytotoxic T cells",
+      "Tcm.Naive.helper.T.cells" = "Tcm/Naive helper T cells",
+      "Tem.Effector.helper.T.cells" = "Tem/Effector helper T cells",
+      "Tem.Temra.cytotoxic.T.cells" = "Tem/Temra cytotoxic T cells",
+      "Tem.Temra.helper.T.cells" = "Tem/Temra helper T cells",
+      "Tem.Trm.cytotoxic.T.cells" = "Tem/Trm cytotoxic T cells",
       .x
     )
   )