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Commit 56dd8d52 authored by Jeffrey Pullin's avatar Jeffrey Pullin
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Change endothelial data to only have 2000 HVGs

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code/prep-endothelial.R
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......@@ -31,7 +31,7 @@ endothelial <- computeSumFactors(endothelial, clusters = clusters)
endothelial <- logNormCounts(endothelial)
dec_endothelial <- modelGeneVarByPoisson(endothelial)
top_endothelial <- getTopHVGs(dec_endothelial, n = 5000)
top_endothelial <- getTopHVGs(dec_endothelial, n = 2000)
endothelial <- endothelial[top_endothelial, ]
saveRDS(endothelial, args$data)
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