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Commit 4ccf3a6c authored by Jeffrey Pullin's avatar Jeffrey Pullin
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Minor adjustments to Snakefile

* Comment out print degbugging statements
* Increase max time for running methods on real data
parent 94016527
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......@@ -60,8 +60,9 @@ sim_data_res_dirs = expand(
sim_data_comb = sim_data_combs
)
print(sim_dirs)
print(sim_data_res_dirs)
# Debugging
# print(sim_dirs)
# print(sim_data_res_dirs)
mg_dirs = expand(
config["sim_mgs_folder"] + "mg-{sim_data_comb}.rds",
......@@ -103,7 +104,7 @@ rule run_method_real_data:
log: config["logs_folder"] + "run_method_real_data-{data_id}-{method_id}.Rout"
resources:
mem_mb=lambda wildcards, attempt: (attempt ** 2) * 6000,
time_min=lambda wildcards, attempt: [20, 60, 60 * 24][attempt - 1]
time_min=lambda wildcards, attempt: [20, 60, 60 * 48][attempt - 1]
benchmark:
"benchmarks/{data_id}-{method_id}_benchmark.txt"
shell: '''R CMD BATCH --no-restore --no-save\
......
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