Improve specification of reticulate python

code/run-nsforest.R

@@ -8,9 +8,6 @@
 #'
 run_nsforest <- function(sce, pars) {
 
-  # Ensure we use the correct conda environment.
-  # FIXME: Move to .Rprofile.
-  Sys.setenv(RETICULATE_PYTHON = "/home/jpullin/.conda/envs/mage/bin/python")
   library(reticulate)
 
   old_wd <- getwd()

code/run-rankcorr.R

@@ -8,9 +8,6 @@
 #'
 run_rankcorr <- function(sce, pars) {
 
-  # Ensure we use the correct conda environment.
-  # FIXME: Move to .Rprofile.
-  Sys.setenv(RETICULATE_PYTHON = "/home/jpullin/.conda/envs/mage/bin/python")
   library(reticulate)
 
   old_wd <- getwd()

code/run-scanpy.R

@@ -8,9 +8,6 @@
 #'
 run_scanpy <- function(sce, pars) {
 
-  # Ensure we use the correct conda environment.
-  # FIXME: Move to .Rprofile.
-  Sys.setenv(RETICULATE_PYTHON = "/home/jpullin/.conda/envs/mage/bin/python")
   library(reticulate)
 
   # Load scanpy (R side).

code/run-scgenefit.R

@@ -8,9 +8,6 @@
 #'
 run_scgenefit <- function(sce, pars) {
 
-  # Ensure we use the correct conda environment.
-  # FIXME: Move to .Rprofile.
-  Sys.setenv(RETICULATE_PYTHON = "/home/jpullin/.conda/envs/mage/bin/python")
   library(reticulate)
 
   scgf_funcs <- import("scGeneFit.functions")

code/run-smash.R

@@ -8,9 +8,6 @@
 #'
 run_smash <- function(sce, pars) {
 
-  # Ensure we use the correct conda environment.
-  # FIXME: Move to .Rprofile.
-  Sys.setenv(RETICULATE_PYTHON = "/home/jpullin/.conda/envs/mage/bin/python")
   library(reticulate)
 
   old_wd <- getwd()