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Commit 3c0b77b1 authored by Ruqian Lyu's avatar Ruqian Lyu
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add merge bam scri[t

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mergeAdtBam.txt 0 → 100644
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View file @ 3c0b77b1
mergedBam/merged.bam
cbBam/SRR8454656.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454670.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454671.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454672.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454673.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454674.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454675.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454677.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454678.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454679.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454681.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454683.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454684.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454685.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454689.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454695.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454710.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454711.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454712.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454713.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454714.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454715.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454716.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454717.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454718.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454719.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454720.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454721.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454722.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454723.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454728.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454729.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454743.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454744.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454745.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454747.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454748.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454749.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454750.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454751.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454753.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454754.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454755.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454756.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454758.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454759.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454764.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454765.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454780.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454782.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454783.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454784.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454785.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454786.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454787.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454789.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454790.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454791.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454792.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454793.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454794.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454795.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454796.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454802.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454816.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454818.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454819.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454820.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454821.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454822.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454823.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454824.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454825.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454827.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454828.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454829.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454830.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454831.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454835.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454837.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454857.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454858.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454859.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454860.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454861.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454862.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454863.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454864.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454865.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454866.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454867.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454868.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454869.mkdup.sort.rmdup.sub.cb.bam
cbBam/SRR8454870.mkdup.sort.rmdup.sub.cb.bam
submit-mergeBams.sh 0 → 100644
+ 9
− 0
View file @ 3c0b77b1
#!/bin/bash
#SBATCH --ntasks=4
#SBATCH --time=24:00:00
#SBATCH --mem=50240
#SBATCH --output=mergeBams.out
samtools merge -@ 4 -b mergeAdtBam.txt -O BAM output/alignment/mergedBam/mergedAll.bam
samtools index -@ 4 output/alignment/mergedBam/mergedAll.bam
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