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submit-runDenovoVC.sh 523 B
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Ruqian Lyu's avatar
add run variant calling
Ruqian Lyu committed
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#!/bin/bash

#SBATCH --ntasks=1
#SBATCH --time=124:00:00
#SBATCH --mem=1000
#SBATCH --output=runsFilterHC.out
#SBATCH --partition=primary

/mnt/mcfiles/rlyu/Software/miniconda3.4.7/envs/rlyubase/bin/snakemake -s run_vcalling.snk --rerun-incomplete -j 1 --use-singularity --singularity-args  "-B /mnt/beegfs/mccarthy/scratch:/mnt/beegfs/mccarthy/scratch,/mnt/mcfiles/rlyu/Projects/:/mnt/mcfiles/rlyu/Projects/" -c "sbatch --mem {resources.mem} --time=120:00:00 --cpus-per-task={resources.cpus} --error=Snakefile_hc.log.out"