Commit 4bc29c66 authored by Lucy McNeill's avatar Lucy McNeill
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add path to example image in README

parent 56dde033
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......@@ -68,6 +68,13 @@ input: `path` to original grey scale image files of (1) Synaptonemal complexes (
output: crops in SC (red) and foci (green) around individual cells into a folder in `path`, called "crops", i.e. in `path/crops/`
setting path in case you want to run these functions:
```r
# set path to where example images are
path = paste0(system.file("extdata",package = "synapsis"))
```
Calling auto_crop (assuming default settings, but see the [vignette](https://gitlab.svi.edu.au/lmcneill/synapsis/-/blob/master/vignettes/synapsis_tutorial_v1.Rmd) for details on entering your own parameters):
```r
......
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