diff --git a/tests/test.sh b/tests/test.sh index 99f8431819443b38364bd6cf56d0434093cf00d2..c83811bee3b5e450c021da204012b1b659349bbe 100644 --- a/tests/test.sh +++ b/tests/test.sh @@ -3,7 +3,7 @@ export PATH="/usr/local/bin/nim-1.4.0/bin:/mnt/mcfiles/rlyu/Software/bcftools-1.9/:/mnt/mcfiles/rlyu/Software/samtools-1.10/:/mnt/mcfiles/rlyu/Software/miniconda3.4.7/bin:/mnt/mcfiles/rlyu/Software/miniconda3.4.7/condabin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/puppetlabs/bin" export LD_LIBRARY_PATH="/mnt/mcfiles/rlyu/.nimble/lib/:/mnt/mcfiles/rlyu/Software/htslib/htslib/:" -./src/sscocaller --threads 2 --chrom 6 tests/AAAGTAGCACGTCTCT-1.raw.bam tests/AAAGTAGCACGTCTCT-1.raw.bam.dp3.alt.vcf.gz tests/bcAA.tsv ./tests/tests- +./src/sscocaller --threads 2 --chrom 6 --minTotalDP 1 --chrom 6 --minDP 1 --baseq 0 tests/AAAGTAGCACGTCTCT-1.raw.bam tests/AAAGTAGCACGTCTCT-1.raw.bam.dp3.alt.vcf.gz tests/bcAA.tsv ./tests/tests- test -e ssshtest || wget -q https://raw.githubusercontent.com/ryanlayer/ssshtest/master/ssshtest