diff --git a/src/sscocaller.nim b/src/sscocaller.nim
index 15b35b4afa64745e5f536b3c5f5ca70410fb45bf..a4f965c8fdce8a9cf09d0cd1e459365335ca58d7 100755
--- a/src/sscocaller.nim
+++ b/src/sscocaller.nim
@@ -13,11 +13,7 @@ import hts
 import tables
 import sequtils
 import math
-<<<<<<< HEAD
-import distributions/rmath
-=======
 from distributions/rmath import dbinom
->>>>>>> 7c0fd54896b7218781289237b99b0cd26eec98a3
 import streams
 
 #echo paramCount(), " ", paramStr(1)
@@ -237,7 +233,7 @@ proc sscocaller(argv: var seq[string]): int =
           if not cons.query:
             roff_only += event.len
         if off <= position: continue
-        over = off - position 
+        over = off - position - roff_only
         # get the base 
         base = aln.base_at(qoff - over)
         break