# 0.99.11 * Add parallel option to lun2Estimate * Allow non-integer library sizes in Lun2Params * Adjust dropout eta value * Adjust comparison plots # 0.99.10 * Improve Splat estimation procedure * Update default Splat parameters * Remove out.loProb Splat parameter * Add MeanZeros plot to compareSCESets # 0.99.9 * Add addGeneLengths function * Update scDD reference # 0.99.8 * Fix bug that meant non-linear path factors weren't stored in output # 0.99.7 * Small changes to avoid NOTEs and reduce check time # 0.99.6 * Add installation to vignette * Add detail about counts matrix to vignette * Replace 1:x with seq_len/seq_along # 0.99.5 * Set R_TESTS environment # 0.99.4 * Version bump to start build # splatter 0.99.3 * Fix to match Bioconductor version of scDD * Add logo to repository # splatter 0.99.2 * Add rownames, colnames to matrices in splatSimulate, lunSimulate * Bump R version to 3.4 # splatter 0.99.1 * Address Biocondutor build warnings, notes # splatter 0.99.0 * Submit to Bioconductor # splatter 0.12.1 * Fix bug in compareSCESets * Dataset order is now kept in plots # splatter 0.12.0 * Add compareSCESets function * Update vignette * Fix LunParams validity bug * Add logo # splatter 0.11.1 * Fix bug in splatSimulatePaths that caused NAs # splatter 0.11.0 * Make compatible with Bioconductor 3.4 # splatter 0.10.1 * Fix error for SCESets in lun2Estimate, scDDEstimate # splatter 0.10.0 * Add listSims function * Add vignette # splatter 0.9.0 * Add scDD simulation # splatter 0.8.0 * Add Lun2 simulation # splatter 0.7.0 * Redesign how parameters are stored * Each simulation now has it's own S4 Params class * Modify exisiting simulations to use new parameter objects # splatter 0.6.0 * Add Lun simulation * Modify splatParams to take Lun parameters # splatter 0.5.0 * Add simple simulation # splatter 0.4.0 * Add splatter simulations * Modify some parts of splatParams and fix bugs # splatter 0.3.0 * Added parameter estimation functions # splatter 0.2.0 * Added splatParams object * Added functions for interacting with splatParams