# Generated by roxygen2: do not edit by hand S3method(lun2Estimate,SCESet) S3method(lun2Estimate,matrix) S3method(lunEstimate,SCESet) S3method(lunEstimate,matrix) S3method(scDDEstimate,SCESet) S3method(scDDEstimate,matrix) S3method(simpleEstimate,SCESet) S3method(simpleEstimate,matrix) S3method(splatEstimate,SCESet) S3method(splatEstimate,matrix) export(compareSCESets) export(getParam) export(getParams) export(listSims) export(lun2Estimate) export(lun2Simulate) export(lunEstimate) export(lunSimulate) export(newLun2Params) export(newLunParams) export(newSCDDParams) export(newSimpleParams) export(newSplatParams) export(scDDEstimate) export(scDDSimulate) export(setParam) export(setParams) export(simpleEstimate) export(simpleSimulate) export(splatEstimate) export(splatSimulate) export(splatSimulateGroups) export(splatSimulatePaths) export(splatSimulateSingle) exportClasses(Lun2Params) exportClasses(LunParams) exportClasses(SCDDParams) exportClasses(SimpleParams) exportClasses(SplatParams) importFrom(Biobase,"fData<-") importFrom(Biobase,"pData<-") importFrom(Biobase,assayData) importFrom(Biobase,fData) importFrom(Biobase,pData) importFrom(checkmate,checkCharacter) importFrom(checkmate,checkClass) importFrom(checkmate,checkFactor) importFrom(checkmate,checkFlag) importFrom(checkmate,checkInt) importFrom(checkmate,checkIntegerish) importFrom(checkmate,checkLogical) importFrom(checkmate,checkNumber) importFrom(checkmate,checkNumeric) importFrom(ggplot2,aes) importFrom(ggplot2,geom_boxplot) importFrom(ggplot2,geom_point) importFrom(ggplot2,geom_smooth) importFrom(ggplot2,geom_violin) importFrom(ggplot2,ggplot) importFrom(ggplot2,ggtitle) importFrom(ggplot2,scale_y_continuous) importFrom(ggplot2,scale_y_log10) importFrom(ggplot2,theme_minimal) importFrom(ggplot2,xlab) importFrom(ggplot2,ylab) importFrom(methods,"slot<-") importFrom(methods,as) importFrom(methods,callNextMethod) importFrom(methods,new) importFrom(methods,slot) importFrom(methods,slotNames) importFrom(methods,validObject) importFrom(scater,"cpm<-") importFrom(scater,"set_exprs<-") importFrom(scater,counts) importFrom(scater,get_exprs) importFrom(scater,newSCESet) importFrom(stats,dnbinom) importFrom(stats,median) importFrom(stats,model.matrix) importFrom(stats,nls) importFrom(stats,rbinom) importFrom(stats,rchisq) importFrom(stats,rgamma) importFrom(stats,rlnorm) importFrom(stats,rnbinom) importFrom(stats,rnorm) importFrom(stats,rpois) importFrom(stats,runif) importFrom(utils,data) importFrom(utils,head)