diff --git a/R/listSims.R b/R/listSims.R index a7085b7521b8ddffaaa9fe495ea3731dea586130..cbf18efc81cb5b9e57531543cd2d03b4b303ac6b 100644 --- a/R/listSims.R +++ b/R/listSims.R @@ -56,7 +56,12 @@ listSims <- function(print = TRUE) { c("PhenoPath", "pheno", "10.1101/159913", "kieranrcampbell/phenopath", "The PhenoPath simulation produces a pseudotime trajectory - with different types of genes.")) + with different types of genes."), + c("ZINB-WaVE", "zinb", "10.1101/125112", + "drisso/zinbwave", + "The ZINB-WaVE simulation simulates counts from a + sophisticated zero-inflated negative-binomial distribution + including cell and gene-level covariates.")) sims.table <- data.frame(Name = rep(NA, length(sims)), Prefix = rep(NA, length(sims)), diff --git a/_pkgdown.yml b/_pkgdown.yml index 0bf1df13f10d6fe928dac469a64c352e92f5c6e7..66805598959cbcf95237f1db8c4cd79fd4c19143 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -21,6 +21,7 @@ reference: - '`SplatParams`' - '`setParam`' - '`setParams`' + - '`ZINBParams`' - title: Estimation desc: Functions for estimating parameters contents: @@ -36,6 +37,7 @@ reference: - '`splatEstLib`' - '`splatEstMean`' - '`splatEstOutlier`' + - '`zinbEstimate`' - title: Simulation desc: Functions for simulating datasets contents: @@ -55,6 +57,7 @@ reference: - '`splatSimLibSizes`' - '`splatSimTrueCounts`' - '`splatSimulate`' + - '`zinbSimulate`' - title: Comparison functions desc: Functions for comparing datasets contents: