From c9b31a5fbb98235d57900ea34f862ac3b5f3b4a4 Mon Sep 17 00:00:00 2001
From: Luke Zappia <lazappi@users.noreply.github.com>
Date: Tue, 20 Aug 2019 18:12:15 +1000
Subject: [PATCH] Fix splotchEstimate example
---
NEWS.md | 1 +
R/splotch-estimate.R | 5 +++--
man/splotchEstimate.Rd | 5 +++--
3 files changed, 7 insertions(+), 4 deletions(-)
diff --git a/NEWS.md b/NEWS.md
index 18d91bd..9143752 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,6 +1,7 @@
### Version 1.9.4.9008 (2019-08-20)
* Merge master into splotch branch
+* Fix dataset in splotchEstimate example
## Version 1.9.4 (2019-08-20)
diff --git a/R/splotch-estimate.R b/R/splotch-estimate.R
index 36a0792..d4bff44 100644
--- a/R/splotch-estimate.R
+++ b/R/splotch-estimate.R
@@ -17,9 +17,10 @@
#' @examples
#' # Load example data
#' library(scater)
-#' data("sc_example_counts")
+#' set.seed(1)
+#' sce <- mockSCE()
#'
-#' params <- splotchEstimate(sc_example_counts)
+#' params <- splotchEstimate(sce)
#' params
#' @export
splotchEstimate <- function(counts, params = newSplotchParams(),
diff --git a/man/splotchEstimate.Rd b/man/splotchEstimate.Rd
index e35772f..d6cc25f 100644
--- a/man/splotchEstimate.Rd
+++ b/man/splotchEstimate.Rd
@@ -33,9 +33,10 @@ is done.
\examples{
# Load example data
library(scater)
-data("sc_example_counts")
+set.seed(1)
+sce <- mockSCE()
-params <- splotchEstimate(sc_example_counts)
+params <- splotchEstimate(sce)
params
}
\seealso{
--
GitLab