From aa3d2663f32a925bcbfc9b638eaf8c5ce5b05406 Mon Sep 17 00:00:00 2001
From: Luke Zappia <lazappi@users.noreply.github.com>
Date: Wed, 4 Oct 2017 14:23:43 +1100
Subject: [PATCH] Add pheno to lists
---
R/listSims.R | 6 +++++-
_pkgdown.yml | 3 +++
2 files changed, 8 insertions(+), 1 deletion(-)
diff --git a/R/listSims.R b/R/listSims.R
index 51fb3ff..a7085b7 100644
--- a/R/listSims.R
+++ b/R/listSims.R
@@ -52,7 +52,11 @@ listSims <- function(print = TRUE) {
"kieranrcampbell/mfa",
"The mfa simulation produces a bifurcating pseudotime
trajectory. This can optionally include genes with transient
- changes in expression and added dropout."))
+ changes in expression and added dropout."),
+ c("PhenoPath", "pheno", "10.1101/159913",
+ "kieranrcampbell/phenopath",
+ "The PhenoPath simulation produces a pseudotime trajectory
+ with different types of genes."))
sims.table <- data.frame(Name = rep(NA, length(sims)),
Prefix = rep(NA, length(sims)),
diff --git a/_pkgdown.yml b/_pkgdown.yml
index cd4c1f1..0bf1df1 100644
--- a/_pkgdown.yml
+++ b/_pkgdown.yml
@@ -15,6 +15,7 @@ reference:
- '`MFAParams`'
- '`newParams`'
- '`Params`'
+ - '`phenoParams`'
- '`SCDDParams`'
- '`SimpleParams`'
- '`SplatParams`'
@@ -26,6 +27,7 @@ reference:
- '`lun2Estimate`'
- '`lunEstimate`'
- '`mfaEstimate`'
+ - '`phenoEstimate`'
- '`scDDEstimate`'
- '`simpleEstimate`'
- '`splatEstBCV`'
@@ -40,6 +42,7 @@ reference:
- '`lun2Simulate`'
- '`lunSimulate`'
- '`mfaSimulate`'
+ - '`phenoEstimate`'
- '`scDDSimulate`'
- '`simpleSimulate`'
- '`splatSimBatchCellMeans`'
--
GitLab