diff --git a/R/listSims.R b/R/listSims.R index 51fb3ff91491b274ff28f5e82d0187bb523c63ba..a7085b7521b8ddffaaa9fe495ea3731dea586130 100644 --- a/R/listSims.R +++ b/R/listSims.R @@ -52,7 +52,11 @@ listSims <- function(print = TRUE) { "kieranrcampbell/mfa", "The mfa simulation produces a bifurcating pseudotime trajectory. This can optionally include genes with transient - changes in expression and added dropout.")) + changes in expression and added dropout."), + c("PhenoPath", "pheno", "10.1101/159913", + "kieranrcampbell/phenopath", + "The PhenoPath simulation produces a pseudotime trajectory + with different types of genes.")) sims.table <- data.frame(Name = rep(NA, length(sims)), Prefix = rep(NA, length(sims)), diff --git a/_pkgdown.yml b/_pkgdown.yml index cd4c1f15af8c7b76d2e5256036d63835e03d3ba6..0bf1df13f10d6fe928dac469a64c352e92f5c6e7 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -15,6 +15,7 @@ reference: - '`MFAParams`' - '`newParams`' - '`Params`' + - '`phenoParams`' - '`SCDDParams`' - '`SimpleParams`' - '`SplatParams`' @@ -26,6 +27,7 @@ reference: - '`lun2Estimate`' - '`lunEstimate`' - '`mfaEstimate`' + - '`phenoEstimate`' - '`scDDEstimate`' - '`simpleEstimate`' - '`splatEstBCV`' @@ -40,6 +42,7 @@ reference: - '`lun2Simulate`' - '`lunSimulate`' - '`mfaSimulate`' + - '`phenoEstimate`' - '`scDDSimulate`' - '`simpleSimulate`' - '`splatSimBatchCellMeans`'