From 789fd9fcdf9db1c1533a0cb49d4b6f823de944ed Mon Sep 17 00:00:00 2001
From: Luke Zappia <lazappi@users.noreply.github.com>
Date: Fri, 4 Aug 2017 16:17:23 +1000
Subject: [PATCH] Add extra.css
---
.Rbuildignore | 1 +
docs/LICENSE.html | 2 +-
docs/articles/index.html | 2 +-
docs/articles/splatter.html | 3 ++-
docs/authors.html | 2 +-
docs/extra.css | 9 ++++++++
docs/index.html | 5 +++--
docs/news/index.html | 2 +-
docs/reference/Lun2Params.html | 2 +-
docs/reference/LunParams.html | 2 +-
docs/reference/Params.html | 2 +-
docs/reference/SCDDParams.html | 2 +-
docs/reference/SimpleParams.html | 2 +-
docs/reference/SplatParams.html | 2 +-
docs/reference/addFeatureStats.html | 2 +-
docs/reference/addGeneLengths.html | 16 ++++++-------
docs/reference/bridge.html | 2 +-
docs/reference/compareSCESets.html | 2 +-
docs/reference/diffSCESets.html | 2 +-
docs/reference/expandParams.html | 2 +-
docs/reference/getLNormFactors.html | 2 +-
docs/reference/getParam.html | 2 +-
docs/reference/getParams.html | 2 +-
docs/reference/getPathOrder.html | 2 +-
docs/reference/index.html | 2 +-
docs/reference/listSims.html | 2 +-
docs/reference/logistic.html | 2 +-
docs/reference/lun2Estimate.html | 2 +-
docs/reference/lun2Simulate.html | 2 +-
docs/reference/lunEstimate.html | 4 ++--
docs/reference/lunSimulate.html | 2 +-
docs/reference/makeCompPanel.html | 2 +-
docs/reference/makeDiffPanel.html | 2 +-
docs/reference/makeOverallPanel.html | 2 +-
docs/reference/newParams.html | 2 +-
docs/reference/rbindMatched.html | 2 +-
docs/reference/scDDEstimate.html | 2 +-
docs/reference/scDDSimulate.html | 2 +-
docs/reference/setParam.html | 4 ++--
docs/reference/setParamUnchecked.html | 2 +-
docs/reference/setParams.html | 8 +++----
docs/reference/setParamsUnchecked.html | 2 +-
docs/reference/showPP.html | 2 +-
docs/reference/simpleEstimate.html | 4 ++--
docs/reference/simpleSimulate.html | 2 +-
docs/reference/splatEstBCV.html | 2 +-
docs/reference/splatEstDropout.html | 2 +-
docs/reference/splatEstLib.html | 2 +-
docs/reference/splatEstMean.html | 2 +-
docs/reference/splatEstOutlier.html | 2 +-
docs/reference/splatEstimate.html | 4 ++--
docs/reference/splatSimBCVMeans.html | 2 +-
docs/reference/splatSimBatchCellMeans.html | 2 +-
docs/reference/splatSimBatchEffects.html | 2 +-
docs/reference/splatSimCellMeans.html | 2 +-
docs/reference/splatSimDE.html | 2 +-
docs/reference/splatSimDropout.html | 2 +-
docs/reference/splatSimGeneMeans.html | 2 +-
docs/reference/splatSimLibSizes.html | 2 +-
docs/reference/splatSimTrueCounts.html | 2 +-
docs/reference/splatSimulate.html | 2 +-
docs/reference/splatter.html | 2 +-
docs/reference/summariseDiff.html | 26 +++++++++++-----------
docs/reference/winsorize.html | 2 +-
pkgdown/extra.css | 9 ++++++++
65 files changed, 110 insertions(+), 89 deletions(-)
create mode 100644 docs/extra.css
create mode 100644 pkgdown/extra.css
diff --git a/.Rbuildignore b/.Rbuildignore
index 40cee3e..a087f76 100644
--- a/.Rbuildignore
+++ b/.Rbuildignore
@@ -7,3 +7,4 @@
^\.git*
^docs$
^_pkgdown\.yml$
+^pkgdown$
diff --git a/docs/LICENSE.html b/docs/LICENSE.html
index 54ec911..7cf011b 100644
--- a/docs/LICENSE.html
+++ b/docs/LICENSE.html
@@ -23,7 +23,7 @@
<link href="pkgdown.css" rel="stylesheet">
<script src="jquery.sticky-kit.min.js"></script>
<script src="pkgdown.js"></script>
-
+ <link href="extra.css" rel="stylesheet">
<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/articles/index.html b/docs/articles/index.html
index 4dbefe3..46ce1cc 100644
--- a/docs/articles/index.html
+++ b/docs/articles/index.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
-
+ <link href="../extra.css" rel="stylesheet">
<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/articles/splatter.html b/docs/articles/splatter.html
index c199f2a..9961e50 100644
--- a/docs/articles/splatter.html
+++ b/docs/articles/splatter.html
@@ -9,7 +9,8 @@
<!-- jquery --><script src="https://code.jquery.com/jquery-3.1.0.min.js" integrity="sha384-nrOSfDHtoPMzJHjVTdCopGqIqeYETSXhZDFyniQ8ZHcVy08QesyHcnOUpMpqnmWq" crossorigin="anonymous"></script><!-- Bootstrap --><link href="https://maxcdn.bootstrapcdn.com/bootswatch/3.3.7/cosmo/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous">
<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa" crossorigin="anonymous"></script><!-- Font Awesome icons --><link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
<!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet">
-<script src="../jquery.sticky-kit.min.js"></script><script src="../pkgdown.js"></script><!-- mathjax --><script src="https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script><!--[if lt IE 9]>
+<script src="../jquery.sticky-kit.min.js"></script><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet">
+<!-- mathjax --><script src="https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script><!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]--><!-- Google analytics --><script>
diff --git a/docs/authors.html b/docs/authors.html
index 57c4468..8b6f31e 100644
--- a/docs/authors.html
+++ b/docs/authors.html
@@ -23,7 +23,7 @@
<link href="pkgdown.css" rel="stylesheet">
<script src="jquery.sticky-kit.min.js"></script>
<script src="pkgdown.js"></script>
-
+ <link href="extra.css" rel="stylesheet">
<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/extra.css b/docs/extra.css
new file mode 100644
index 0000000..5a8e0b1
--- /dev/null
+++ b/docs/extra.css
@@ -0,0 +1,9 @@
+.fl {color: blue;}
+.fu {color: #00ADEF;} /* function */
+.ch,.st {color: #F47920;} /* string */
+.kw {color: #7A52C7;} /* keyword */
+.co {color: #8DC63F;} /* comment */
+
+.message { color: gray; font-weight: bolder;}
+.error { color: red; font-weight: bolder;}
+.warning { color: purple; font-weight: bolder;}
diff --git a/docs/index.html b/docs/index.html
index 7a16a9b..42288e4 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -9,7 +9,8 @@
<!-- jquery --><script src="https://code.jquery.com/jquery-3.1.0.min.js" integrity="sha384-nrOSfDHtoPMzJHjVTdCopGqIqeYETSXhZDFyniQ8ZHcVy08QesyHcnOUpMpqnmWq" crossorigin="anonymous"></script><!-- Bootstrap --><link href="https://maxcdn.bootstrapcdn.com/bootswatch/3.3.7/cosmo/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous">
<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa" crossorigin="anonymous"></script><!-- Font Awesome icons --><link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
<!-- pkgdown --><link href="pkgdown.css" rel="stylesheet">
-<script src="jquery.sticky-kit.min.js"></script><script src="pkgdown.js"></script><!-- mathjax --><script src="https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script><!--[if lt IE 9]>
+<script src="jquery.sticky-kit.min.js"></script><script src="pkgdown.js"></script><link href="extra.css" rel="stylesheet">
+<!-- mathjax --><script src="https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script><!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]--><!-- Google analytics --><script>
@@ -82,7 +83,7 @@
<li>Functions for comparing simulations and real datasets</li>
</ul>
<p>Splatter is built on top of <a href="https://github.com/davismcc/scater"><code>scater</code></a> and stores simulations in <code>SCESet</code> objects. Splatter also has functions for comparing simulations and real datasets.</p>
-<p><strong>!Please note!</strong> This site provides documentation for the development version of Splatter. For details on the current release please refer to [<a href="https://bioconductor.org/packages/splatter" class="uri">https://bioconductor.org/packages/splatter</a>].</p>
+<p><strong>!Please note!</strong> This site provides documentation for the development version of Splatter. For details on the current release please refer to <a href="https://bioconductor.org/packages/splatter" class="uri">https://bioconductor.org/packages/splatter</a>.</p>
<div id="installation-" class="section level2">
<h2 class="hasAnchor">
<a href="#installation-" class="anchor"></a>Installation.</h2>
diff --git a/docs/news/index.html b/docs/news/index.html
index 203a21e..a3e2c7a 100644
--- a/docs/news/index.html
+++ b/docs/news/index.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
-
+ <link href="../extra.css" rel="stylesheet">
<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/Lun2Params.html b/docs/reference/Lun2Params.html
index 7dd56b7..f98a23c 100644
--- a/docs/reference/Lun2Params.html
+++ b/docs/reference/Lun2Params.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
-
+ <link href="../extra.css" rel="stylesheet">
<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/LunParams.html b/docs/reference/LunParams.html
index 2b7b910..6ec76c4 100644
--- a/docs/reference/LunParams.html
+++ b/docs/reference/LunParams.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
-
+ <link href="../extra.css" rel="stylesheet">
<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/Params.html b/docs/reference/Params.html
index 6c750e8..46b9953 100644
--- a/docs/reference/Params.html
+++ b/docs/reference/Params.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
-
+ <link href="../extra.css" rel="stylesheet">
<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/SCDDParams.html b/docs/reference/SCDDParams.html
index 22511f7..febb1a8 100644
--- a/docs/reference/SCDDParams.html
+++ b/docs/reference/SCDDParams.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
-
+ <link href="../extra.css" rel="stylesheet">
<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/SimpleParams.html b/docs/reference/SimpleParams.html
index f0d5d88..e7512c9 100644
--- a/docs/reference/SimpleParams.html
+++ b/docs/reference/SimpleParams.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
-
+ <link href="../extra.css" rel="stylesheet">
<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/SplatParams.html b/docs/reference/SplatParams.html
index b0dbbb3..9a310a4 100644
--- a/docs/reference/SplatParams.html
+++ b/docs/reference/SplatParams.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
-
+ <link href="../extra.css" rel="stylesheet">
<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/addFeatureStats.html b/docs/reference/addFeatureStats.html
index ccea3ea..ba93ed5 100644
--- a/docs/reference/addFeatureStats.html
+++ b/docs/reference/addFeatureStats.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
-
+ <link href="../extra.css" rel="stylesheet">
<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/addGeneLengths.html b/docs/reference/addGeneLengths.html
index e4e7505..72ab65f 100644
--- a/docs/reference/addGeneLengths.html
+++ b/docs/reference/addGeneLengths.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
-
+ <link href="../extra.css" rel="stylesheet">
<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
@@ -151,13 +151,13 @@ replacement) from a supplied vector.</p>
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
<pre class="examples"><div class='input'><span class='co'># Default generate method</span>
<span class='no'>sce</span> <span class='kw'><-</span> <span class='fu'><a href='simpleSimulate.html'>simpleSimulate</a></span>()</div><div class='output co'>#> <span class='message'>Simulating means...</span></div><div class='output co'>#> <span class='message'>Simulating counts...</span></div><div class='output co'>#> <span class='message'>Creating final SCESet...</span></div><div class='input'><span class='no'>sce</span> <span class='kw'><-</span> <span class='fu'>addGeneLengths</span>(<span class='no'>sce</span>)
-<span class='fu'>head</span>(<span class='fu'>fData</span>(<span class='no'>sce</span>))</div><div class='output co'>#> Gene GeneMean Length
-#> Gene1 Gene1 1.885070e+00 2874
-#> Gene2 Gene2 5.651522e+00 1169
-#> Gene3 Gene3 1.109488e+01 2330
-#> Gene4 Gene4 8.549893e-03 4415
-#> Gene5 Gene5 5.620109e-04 7288
-#> Gene6 Gene6 4.884267e-02 4316</div><div class='input'># Sample method (human coding genes)
+<span class='fu'>head</span>(<span class='fu'>fData</span>(<span class='no'>sce</span>))</div><div class='output co'>#> Gene GeneMean Length
+#> Gene1 Gene1 2.48516793 4364
+#> Gene2 Gene2 2.66764544 2293
+#> Gene3 Gene3 1.63746271 1981
+#> Gene4 Gene4 5.95066226 8532
+#> Gene5 Gene5 1.79688466 2083
+#> Gene6 Gene6 0.09561467 3011</div><div class='input'># Sample method (human coding genes)
</div><span class='co'># NOT RUN {</span>
<span class='fu'>library</span>(<span class='no'>TxDb.Hsapiens.UCSC.hg19.knownGene</span>)
<span class='fu'>library</span>(<span class='no'>GenomicFeatures</span>)
diff --git a/docs/reference/bridge.html b/docs/reference/bridge.html
index d443a8e..10ca1eb 100644
--- a/docs/reference/bridge.html
+++ b/docs/reference/bridge.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
-
+ <link href="../extra.css" rel="stylesheet">
<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/compareSCESets.html b/docs/reference/compareSCESets.html
index 248ac59..fbe692e 100644
--- a/docs/reference/compareSCESets.html
+++ b/docs/reference/compareSCESets.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
-
+ <link href="../extra.css" rel="stylesheet">
<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/diffSCESets.html b/docs/reference/diffSCESets.html
index 37b254f..0a70e1f 100644
--- a/docs/reference/diffSCESets.html
+++ b/docs/reference/diffSCESets.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
-
+ <link href="../extra.css" rel="stylesheet">
<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/expandParams.html b/docs/reference/expandParams.html
index 45e1f02..f001300 100644
--- a/docs/reference/expandParams.html
+++ b/docs/reference/expandParams.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
-
+ <link href="../extra.css" rel="stylesheet">
<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/getLNormFactors.html b/docs/reference/getLNormFactors.html
index aab9307..522bee7 100644
--- a/docs/reference/getLNormFactors.html
+++ b/docs/reference/getLNormFactors.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
-
+ <link href="../extra.css" rel="stylesheet">
<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/getParam.html b/docs/reference/getParam.html
index 7bbd0a9..fce5d85 100644
--- a/docs/reference/getParam.html
+++ b/docs/reference/getParam.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
-
+ <link href="../extra.css" rel="stylesheet">
<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/getParams.html b/docs/reference/getParams.html
index 2778ac9..0090051 100644
--- a/docs/reference/getParams.html
+++ b/docs/reference/getParams.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
-
+ <link href="../extra.css" rel="stylesheet">
<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/getPathOrder.html b/docs/reference/getPathOrder.html
index 21889be..c5be15a 100644
--- a/docs/reference/getPathOrder.html
+++ b/docs/reference/getPathOrder.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
-
+ <link href="../extra.css" rel="stylesheet">
<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/index.html b/docs/reference/index.html
index 19ba746..297b252 100644
--- a/docs/reference/index.html
+++ b/docs/reference/index.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
-
+ <link href="../extra.css" rel="stylesheet">
<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/listSims.html b/docs/reference/listSims.html
index 3deaaa5..9493cc3 100644
--- a/docs/reference/listSims.html
+++ b/docs/reference/listSims.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
-
+ <link href="../extra.css" rel="stylesheet">
<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/logistic.html b/docs/reference/logistic.html
index ab5d9fc..5f8cce0 100644
--- a/docs/reference/logistic.html
+++ b/docs/reference/logistic.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
-
+ <link href="../extra.css" rel="stylesheet">
<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/lun2Estimate.html b/docs/reference/lun2Estimate.html
index 000ad4a..4ce5584 100644
--- a/docs/reference/lun2Estimate.html
+++ b/docs/reference/lun2Estimate.html
@@ -23,7 +23,7 @@
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/lun2Simulate.html b/docs/reference/lun2Simulate.html
index 2ce14d5..e7c8f35 100644
--- a/docs/reference/lun2Simulate.html
+++ b/docs/reference/lun2Simulate.html
@@ -23,7 +23,7 @@
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<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/lunEstimate.html b/docs/reference/lunEstimate.html
index 888bcdb..e6179fc 100644
--- a/docs/reference/lunEstimate.html
+++ b/docs/reference/lunEstimate.html
@@ -23,7 +23,7 @@
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<script src="../pkgdown.js"></script>
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
@@ -146,7 +146,7 @@ for more details on the parameters.</p>
#>
#> Global:
#> (GENES) (CELLS) [Seed]
-#> 2000 40 269882
+#> 2000 40 88458
#>
#> 9 additional parameters
#>
diff --git a/docs/reference/lunSimulate.html b/docs/reference/lunSimulate.html
index 5ee5bcb..7b18807 100644
--- a/docs/reference/lunSimulate.html
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@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/makeCompPanel.html b/docs/reference/makeCompPanel.html
index 976eea3..fae7764 100644
--- a/docs/reference/makeCompPanel.html
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@@ -23,7 +23,7 @@
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+ <link href="../extra.css" rel="stylesheet">
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diff --git a/docs/reference/makeDiffPanel.html b/docs/reference/makeDiffPanel.html
index 978c0c7..2c9b518 100644
--- a/docs/reference/makeDiffPanel.html
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@@ -23,7 +23,7 @@
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<script src="../pkgdown.js"></script>
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+ <link href="../extra.css" rel="stylesheet">
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diff --git a/docs/reference/makeOverallPanel.html b/docs/reference/makeOverallPanel.html
index a7eb253..105774d 100644
--- a/docs/reference/makeOverallPanel.html
+++ b/docs/reference/makeOverallPanel.html
@@ -23,7 +23,7 @@
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<script src="../pkgdown.js"></script>
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/newParams.html b/docs/reference/newParams.html
index 486e37a..e7e2426 100644
--- a/docs/reference/newParams.html
+++ b/docs/reference/newParams.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/rbindMatched.html b/docs/reference/rbindMatched.html
index 0ec0cf1..f7064fb 100644
--- a/docs/reference/rbindMatched.html
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@@ -23,7 +23,7 @@
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<script src="../pkgdown.js"></script>
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/scDDEstimate.html b/docs/reference/scDDEstimate.html
index 9defdca..6d47efe 100644
--- a/docs/reference/scDDEstimate.html
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@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/scDDSimulate.html b/docs/reference/scDDSimulate.html
index 64b1fe4..7375cca 100644
--- a/docs/reference/scDDSimulate.html
+++ b/docs/reference/scDDSimulate.html
@@ -23,7 +23,7 @@
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<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/setParam.html b/docs/reference/setParam.html
index 9a5c2bc..827501f 100644
--- a/docs/reference/setParam.html
+++ b/docs/reference/setParam.html
@@ -23,7 +23,7 @@
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<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
@@ -151,7 +151,7 @@
#>
#> Global:
#> (GENES) (Cells) [Seed]
-#> 100 100 269882
+#> 100 100 88458
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diff --git a/docs/reference/setParamUnchecked.html b/docs/reference/setParamUnchecked.html
index fc9aee0..c17d16d 100644
--- a/docs/reference/setParamUnchecked.html
+++ b/docs/reference/setParamUnchecked.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
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<script src="../pkgdown.js"></script>
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/setParams.html b/docs/reference/setParams.html
index d8e2583..a4d4f35 100644
--- a/docs/reference/setParams.html
+++ b/docs/reference/setParams.html
@@ -23,7 +23,7 @@
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
@@ -146,7 +146,7 @@ them manually), see examples.</p>
#>
#> Global:
#> (Genes) (Cells) [Seed]
-#> 10000 100 269882
+#> 10000 100 88458
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@@ -164,7 +164,7 @@ them manually), see examples.</p>
#>
#> Global:
#> (GENES) (CELLS) [Seed]
-#> 1000 50 269882
+#> 1000 50 88458
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#> 3 additional parameters
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@@ -182,7 +182,7 @@ them manually), see examples.</p>
#>
#> Global:
#> (GENES) (CELLS) [Seed]
-#> 1000 50 269882
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#>
#> 3 additional parameters
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diff --git a/docs/reference/setParamsUnchecked.html b/docs/reference/setParamsUnchecked.html
index 87adf4a..e88d82d 100644
--- a/docs/reference/setParamsUnchecked.html
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@@ -23,7 +23,7 @@
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<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/showPP.html b/docs/reference/showPP.html
index 11b8318..9b91e3b 100644
--- a/docs/reference/showPP.html
+++ b/docs/reference/showPP.html
@@ -23,7 +23,7 @@
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<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/simpleEstimate.html b/docs/reference/simpleEstimate.html
index 4455a8b..b9a4cc3 100644
--- a/docs/reference/simpleEstimate.html
+++ b/docs/reference/simpleEstimate.html
@@ -23,7 +23,7 @@
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<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
@@ -148,7 +148,7 @@ details on the parameters.</p>
#>
#> Global:
#> (GENES) (CELLS) [Seed]
-#> 2000 40 269882
+#> 2000 40 88458
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#> 3 additional parameters
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diff --git a/docs/reference/simpleSimulate.html b/docs/reference/simpleSimulate.html
index 2e724c6..d86c215 100644
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@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/splatEstBCV.html b/docs/reference/splatEstBCV.html
index 0112022..2787af9 100644
--- a/docs/reference/splatEstBCV.html
+++ b/docs/reference/splatEstBCV.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/splatEstDropout.html b/docs/reference/splatEstDropout.html
index 8ac7de9..f00cf74 100644
--- a/docs/reference/splatEstDropout.html
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@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/splatEstLib.html b/docs/reference/splatEstLib.html
index e80367d..c986a2c 100644
--- a/docs/reference/splatEstLib.html
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@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/splatEstMean.html b/docs/reference/splatEstMean.html
index b4938d7..4443f94 100644
--- a/docs/reference/splatEstMean.html
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@@ -23,7 +23,7 @@
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<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/splatEstOutlier.html b/docs/reference/splatEstOutlier.html
index 8001a94..647896a 100644
--- a/docs/reference/splatEstOutlier.html
+++ b/docs/reference/splatEstOutlier.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
-
+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/splatEstimate.html b/docs/reference/splatEstimate.html
index 5111395..1d4eb22 100644
--- a/docs/reference/splatEstimate.html
+++ b/docs/reference/splatEstimate.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
@@ -148,7 +148,7 @@ data to estimate parameters from.</p></td>
#>
#> Global:
#> (GENES) (CELLS) [Seed]
-#> 2000 40 269882
+#> 2000 40 88458
#>
#> 27 additional parameters
#>
diff --git a/docs/reference/splatSimBCVMeans.html b/docs/reference/splatSimBCVMeans.html
index 8862fd3..ba6bfcf 100644
--- a/docs/reference/splatSimBCVMeans.html
+++ b/docs/reference/splatSimBCVMeans.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/splatSimBatchCellMeans.html b/docs/reference/splatSimBatchCellMeans.html
index 036f996..1e8a321 100644
--- a/docs/reference/splatSimBatchCellMeans.html
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@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/splatSimBatchEffects.html b/docs/reference/splatSimBatchEffects.html
index e8f57f2..5eb6fb5 100644
--- a/docs/reference/splatSimBatchEffects.html
+++ b/docs/reference/splatSimBatchEffects.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/splatSimCellMeans.html b/docs/reference/splatSimCellMeans.html
index afaf5ca..605d3bf 100644
--- a/docs/reference/splatSimCellMeans.html
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@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/splatSimDE.html b/docs/reference/splatSimDE.html
index 2f24c0f..cd926d7 100644
--- a/docs/reference/splatSimDE.html
+++ b/docs/reference/splatSimDE.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/splatSimDropout.html b/docs/reference/splatSimDropout.html
index 6a2f69f..612b648 100644
--- a/docs/reference/splatSimDropout.html
+++ b/docs/reference/splatSimDropout.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
-
+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/splatSimGeneMeans.html b/docs/reference/splatSimGeneMeans.html
index d0da64c..47e3587 100644
--- a/docs/reference/splatSimGeneMeans.html
+++ b/docs/reference/splatSimGeneMeans.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
-
+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/splatSimLibSizes.html b/docs/reference/splatSimLibSizes.html
index 5977230..e10e335 100644
--- a/docs/reference/splatSimLibSizes.html
+++ b/docs/reference/splatSimLibSizes.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
-
+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/splatSimTrueCounts.html b/docs/reference/splatSimTrueCounts.html
index 105b484..5d8336b 100644
--- a/docs/reference/splatSimTrueCounts.html
+++ b/docs/reference/splatSimTrueCounts.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
-
+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/splatSimulate.html b/docs/reference/splatSimulate.html
index fbe66ed..653dd21 100644
--- a/docs/reference/splatSimulate.html
+++ b/docs/reference/splatSimulate.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
-
+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/splatter.html b/docs/reference/splatter.html
index 065fd42..3bcc5e2 100644
--- a/docs/reference/splatter.html
+++ b/docs/reference/splatter.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
diff --git a/docs/reference/summariseDiff.html b/docs/reference/summariseDiff.html
index 8ba4119..c1c7633 100644
--- a/docs/reference/summariseDiff.html
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@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
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+ <link href="../extra.css" rel="stylesheet">
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<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
@@ -127,19 +127,19 @@ Error (RMSE) for the various properties and ranks them.</p>
<pre class="examples"><div class='input'><span class='no'>sim1</span> <span class='kw'><-</span> <span class='fu'><a href='splatSimulate.html'>splatSimulate</a></span>(<span class='kw'>nGenes</span> <span class='kw'>=</span> <span class='fl'>1000</span>, <span class='kw'>batchCells</span> <span class='kw'>=</span> <span class='fl'>20</span>)</div><div class='output co'>#> <span class='message'>Getting parameters...</span></div><div class='output co'>#> <span class='message'>Creating simulation object...</span></div><div class='output co'>#> <span class='message'>Simulating library sizes...</span></div><div class='output co'>#> <span class='message'>Simulating gene means...</span></div><div class='output co'>#> <span class='message'>Simulating BCV...</span></div><div class='output co'>#> <span class='message'>Simulating counts..</span></div><div class='output co'>#> <span class='message'>Simulating dropout (if needed)...</span></div><div class='output co'>#> <span class='message'>Creating final SCESet...</span></div><div class='output co'>#> <span class='message'>Done!</span></div><div class='input'><span class='no'>sim2</span> <span class='kw'><-</span> <span class='fu'><a href='simpleSimulate.html'>simpleSimulate</a></span>(<span class='kw'>nGenes</span> <span class='kw'>=</span> <span class='fl'>1000</span>, <span class='kw'>nCells</span> <span class='kw'>=</span> <span class='fl'>20</span>)</div><div class='output co'>#> <span class='message'>Simulating means...</span></div><div class='output co'>#> <span class='message'>Simulating counts...</span></div><div class='output co'>#> <span class='message'>Creating final SCESet...</span></div><div class='input'><span class='no'>difference</span> <span class='kw'><-</span> <span class='fu'><a href='diffSCESets.html'>diffSCESets</a></span>(<span class='fu'>list</span>(<span class='kw'>Splat</span> <span class='kw'>=</span> <span class='no'>sim1</span>, <span class='kw'>Simple</span> <span class='kw'>=</span> <span class='no'>sim2</span>), <span class='kw'>ref</span> <span class='kw'>=</span> <span class='st'>"Simple"</span>)
<span class='no'>summary</span> <span class='kw'><-</span> <span class='fu'>summariseDiff</span>(<span class='no'>difference</span>)
<span class='fu'>head</span>(<span class='no'>summary</span>)</div><div class='output co'>#> Dataset Statistic MAD MADScaled MADRank MAE MAEScaled
-#> 1 Splat Mean 2.840543 NaN 1 2.850934 NaN
-#> 2 Splat Variance 11.680343 NaN 1 10.451830 NaN
-#> 3 Splat ZerosGene 40.000000 NaN 1 44.485000 NaN
-#> 4 Splat MeanVar 11.047790 NaN 1 12.143856 NaN
-#> 5 Splat MeanZeros 45.000000 NaN 1 44.780000 NaN
-#> 6 Splat LibSize 62717.000000 NaN 1 62238.650000 NaN
+#> 1 Splat Mean 2.680705 NaN 1 2.613714 NaN
+#> 2 Splat Variance 11.803596 NaN 1 10.839966 NaN
+#> 3 Splat ZerosGene 35.000000 NaN 1 41.705000 NaN
+#> 4 Splat MeanVar 11.293733 NaN 1 12.494680 NaN
+#> 5 Splat MeanZeros 45.000000 NaN 1 43.895000 NaN
+#> 6 Splat LibSize 62080.000000 NaN 1 63692.450000 NaN
#> MAERank RMSE RMSEScaled RMSERank
-#> 1 1 3.426694 NaN 1
-#> 2 1 13.221106 NaN 1
-#> 3 1 47.795136 NaN 1
-#> 4 1 15.125288 NaN 1
-#> 5 1 54.805109 NaN 1
-#> 6 1 64042.506466 NaN 1</div></pre>
+#> 1 1 3.125188 NaN 1
+#> 2 1 13.638865 NaN 1
+#> 3 1 45.945892 NaN 1
+#> 4 1 15.583460 NaN 1
+#> 5 1 53.301735 NaN 1
+#> 6 1 64680.944707 NaN 1</div></pre>
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diff --git a/docs/reference/winsorize.html b/docs/reference/winsorize.html
index 55de24d..320f7ea 100644
--- a/docs/reference/winsorize.html
+++ b/docs/reference/winsorize.html
@@ -23,7 +23,7 @@
<link href="../pkgdown.css" rel="stylesheet">
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diff --git a/pkgdown/extra.css b/pkgdown/extra.css
new file mode 100644
index 0000000..5a8e0b1
--- /dev/null
+++ b/pkgdown/extra.css
@@ -0,0 +1,9 @@
+.fl {color: blue;}
+.fu {color: #00ADEF;} /* function */
+.ch,.st {color: #F47920;} /* string */
+.kw {color: #7A52C7;} /* keyword */
+.co {color: #8DC63F;} /* comment */
+
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+.error { color: red; font-weight: bolder;}
+.warning { color: purple; font-weight: bolder;}
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