From 5bb38e0dfadac4505d6707a2478b197c1d5ef5e7 Mon Sep 17 00:00:00 2001
From: Luke Zappia <lazappi@users.noreply.github.com>
Date: Fri, 11 Oct 2019 16:17:39 +1100
Subject: [PATCH] Add missing documentation for sce in getCounts
---
NEWS.md | 2 ++
R/SCE-functions.R | 2 +-
man/getCounts.Rd | 2 +-
3 files changed, 4 insertions(+), 2 deletions(-)
diff --git a/NEWS.md b/NEWS.md
index 3984e30..431f7a0 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,5 +1,7 @@
# DEVELOPMENT VERSION
+* Add missing documentation for sce argument in getCounts
+
## Version 1.9.8 (2019-10-11)
* Add Kersplat simulation! Still experimental but is useable.
diff --git a/R/SCE-functions.R b/R/SCE-functions.R
index 609345b..b03b17b 100644
--- a/R/SCE-functions.R
+++ b/R/SCE-functions.R
@@ -148,7 +148,7 @@ addGeneLengths <- function(sce, method = c("generate", "sample"), loc = 7.9,
#' Get counts matrix from a SingleCellExperiment object. If counts is missing
#' a warning is issued and the first assay is returned.
#'
-#' @param sce
+#' @param sce SingleCellExperiment object
#'
#' @return Counts matrix
getCounts <- function(sce) {
diff --git a/man/getCounts.Rd b/man/getCounts.Rd
index 4117bbd..2f4f04f 100644
--- a/man/getCounts.Rd
+++ b/man/getCounts.Rd
@@ -7,7 +7,7 @@
getCounts(sce)
}
\arguments{
-\item{sce}{}
+\item{sce}{SingleCellExperiment object}
}
\value{
Counts matrix
--
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