From 4a4e17dc92a601c83a754a3ac65863107946b594 Mon Sep 17 00:00:00 2001
From: Luke Zappia <lazappi@users.noreply.github.com>
Date: Fri, 13 Oct 2017 16:42:59 +1100
Subject: [PATCH] Update lun2 reference
---
R/listSims.R | 2 +-
R/lun2-simulate.R | 4 ++--
man/lun2Simulate.Rd | 4 ++--
3 files changed, 5 insertions(+), 5 deletions(-)
diff --git a/R/listSims.R b/R/listSims.R
index 2fc06d1..4dadb14 100644
--- a/R/listSims.R
+++ b/R/listSims.R
@@ -40,7 +40,7 @@ listSims <- function(print = TRUE) {
"Gamma distributed means and negative binomial counts. Cells
are given a size factor and differential expression can be
simulated with fixed fold changes."),
- c("Lun 2", "lun2", "10.1101/073973",
+ c("Lun 2", "lun2", "10.1093/biostatistics/kxw055",
"MarioniLab/PlateEffects2016",
"Negative binomial counts where the means and dispersions
have been sampled from a real dataset. The core feature of
diff --git a/R/lun2-simulate.R b/R/lun2-simulate.R
index 35329de..c839eed 100644
--- a/R/lun2-simulate.R
+++ b/R/lun2-simulate.R
@@ -30,9 +30,9 @@
#'
#' @references
#' Lun ATL, Marioni JC. Overcoming confounding plate effects in differential
-#' expression analyses of single-cell RNA-seq data. bioRxiv (2016).
+#' expression analyses of single-cell RNA-seq data. Biostatistics (2017).
#'
-#' Paper: \url{dx.doi.org/10.1101/073973}
+#' Paper: \url{dx.doi.org/10.1093/biostatistics/kxw055}
#'
#' Code: \url{https://github.com/MarioniLab/PlateEffects2016}
#'
diff --git a/man/lun2Simulate.Rd b/man/lun2Simulate.Rd
index e091ce9..4b6c66d 100644
--- a/man/lun2Simulate.Rd
+++ b/man/lun2Simulate.Rd
@@ -45,9 +45,9 @@ sim <- lun2Simulate()
}
\references{
Lun ATL, Marioni JC. Overcoming confounding plate effects in differential
-expression analyses of single-cell RNA-seq data. bioRxiv (2016).
+expression analyses of single-cell RNA-seq data. Biostatistics (2017).
-Paper: \url{dx.doi.org/10.1101/073973}
+Paper: \url{dx.doi.org/10.1093/biostatistics/kxw055}
Code: \url{https://github.com/MarioniLab/PlateEffects2016}
}
--
GitLab