diff --git a/DESCRIPTION b/DESCRIPTION index 6a7515cc80148860411f941206b0b1c0aaf91aa2..99fc0179003184ac388e01955df6baa5a2b70280 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: splatter Type: Package Title: Simple Simulation of Single-cell RNA Sequencing Data -Version: 1.9.10 +Version: 1.9.11 Date: 2019-10-20 Authors@R: c(person("Luke", "Zappia", role = c("aut", "cre"), diff --git a/NEWS.md b/NEWS.md index b6d2492a35191aa88cb964513d6680a056c603a7..8e327dab038023dd55039c84af2efa4a5142ce7c 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,5 +1,9 @@ # DEVELOPMENT VERSION +## Version 1.9.11 (2019-10-20) + +* Update NEWS.Rd + ## Version 1.9.10 (2019-10-20) * Update scater QC function names @@ -12,8 +16,8 @@ ## Version 1.9.8 (2019-10-11) * Add Kersplat simulation! Still experimental but is useable. -`* Check for counts assay when estimating from SingleCellExperiment objects -` (Fixes #82) +* Check for counts assay when estimating from SingleCellExperiment objects + (Fixes #82) * Fix where simpleSimulate stores parameters (Fixes #72) ### Version 1.9.7.9019 (2019-10-11) diff --git a/inst/NEWS.Rd b/inst/NEWS.Rd index 39facd952f2bf5a52bdfc88bf61310d5e146b6fd..a805735256d160e7a4f24898c4cee32bc7ebc562 100644 --- a/inst/NEWS.Rd +++ b/inst/NEWS.Rd @@ -1,7 +1,26 @@ \name{NEWS} \title{News for Package \pkg{splatter}} -\section{Version 1.8.0, Bioconductor 3.9 Release (2018-04-18)}{ +\section{Version 1.10.0, Bioconductor 3.10 Release (2019-10-20)}{ + \itemize{ + \item{Add the (experimental) Kersplat simulation model. This model + incorporates a gene network and other useful features.} + \item{Refactor the summariseDiff function and add the KS statistic.} + \item{Add variable gene correlation plot to compareSCEs and violins to + other comparison plots.} + \item{Check for counts assay when estimating from SingleCellExperiment + objects.} + \item{Fix where simpleSimulate stores parameters.} + \item{Fix bugs where parameters were not being passed correctly in + BASiCSEstimate and sparseDCEstimate.} + \item{Replace the sc_example_counts dataset from scater with the mockSCE + function.} + \item{Tidy and improve estimation function examples and add checks for + suggested packages.} + \item{Various fixes for compatibility with updates to other packages.} +} + +\section{Version 1.8.0, Bioconductor 3.9 Release (2019-04-18)}{ \itemize{ \item{Add a Splat parameters vignette} \item{Rename the Splat path.length parameter to path.nSteps}