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Luke Zappia authored
Basic skeleton so far
Luke Zappia authoredBasic skeleton so far
DESCRIPTION 1.84 KiB
Package: splatter
Type: Package
Title: Simple Simulation of Single-cell RNA Sequencing Data
Version: 1.9.2.9000
Date: 2019-07-11
Author: Luke Zappia
Authors@R:
c(person("Luke", "Zappia", role = c("aut", "cre"),
email = "luke.zappia@mcri.edu.au",
comment = c(ORCID = "0000-0001-7744-8565")),
person("Belinda", "Phipson", role = c("aut"),
email = "belinda.phipson@mcri.edu.au",
comment = c(ORCID = "0000-0002-1711-7454")),
person("Alicia", "Oshlack", role = c("aut"),
email = "alicia.oshlack@mcri.edu.au",
comment = c(ORCID = "0000-0001-9788-5690")))
Maintainer: Luke Zappia <luke.zappia@mcri.edu.au>
Description: Splatter is a package for the simulation of single-cell RNA
sequencing count data. It provides a simple interface for creating complex
simulations that are reproducible and well-documented. Parameters can be
estimated from real data and functions are provided for comparing real and
simulated datasets.
License: GPL-3 + file LICENSE
LazyData: TRUE
Depends:
R (>= 3.4),
SingleCellExperiment
Imports:
akima,
BiocGenerics,
BiocParallel,
checkmate,
edgeR,
fitdistrplus,
ggplot2,
locfit,
matrixStats,
methods,
scales,
scater (>= 1.7.4),
stats,
SummarizedExperiment,
utils,
crayon,
S4Vectors
Suggests:
BiocStyle,
covr,
cowplot,
knitr,
limSolve,
lme4,
progress,
pscl,
testthat,
rmarkdown,
scDD,
scran,
mfa,
phenopath,
BASiCS,
zinbwave,
SparseDC,
BiocManager,
spelling,
igraph
biocViews: SingleCell, RNASeq, Transcriptomics, GeneExpression, Sequencing,
Software, ImmunoOncology
URL: https://github.com/Oshlack/splatter
BugReports: https://github.com/Oshlack/splatter/issues
RoxygenNote: 6.1.1
Encoding: UTF-8
VignetteBuilder: knitr
Language: en-GB