Simulate counts using the BASiCS method.
BASiCSSimulate(params = newBASiCSParams(), verbose = TRUE, ...)
params | BASiCSParams object containing simulation parameters. |
---|---|
verbose | logical. Whether to print progress messages |
... | any additional parameter settings to override what is provided in
|
SingleCellExperiment containing simulated counts
This function is just a wrapper around BASiCS_Sim
that
takes a BASiCSParams
, runs the simulation then converts the
output to a SingleCellExperiment
object.
See BASiCS_Sim
for more details of how the simulation
works.
Vallejos CA, Marioni JC, Richardson S. BASiCS: Bayesian Analysis of Single-Cell Sequencing data. PLoS Computational Biology (2015).
Paper: 10.1371/journal.pcbi.1004333
Code: https://github.com/catavallejos/BASiCS
#>#>#> Warning: Number of gene.params not equal to nGenes, gene.params will be sampled.#> Warning: Number of cell.params not equal to nCells, cell.params will be sampled.#>#> Warning: 'SingleCellExperiment::`isSpike<-`' is deprecated. #> Use 'isSpike<-' instead. #> See help("Deprecated")#> Warning: 'spikeNames' is deprecated. #> See help("Deprecated")#> Warning: 'isSpike' is deprecated. #> See help("Deprecated")#>#>