add_known()
Add known counts to sims dataframe for ggplot
arrivals.FUN()
Arrivals function
as.data.frame(<seiqhrf>)
Extract Model Data for Stochastic Models
control_seiqhrf()
Control Settings for Stochastic Individual Contact Models
cum_discr_si()
Sample value from Weibull distribution
departures.FUN()
Departures function
format_sims()
Format seiqhrf objects into dataframe for ggplot
get_ci()
Get 95% confidence intervals
get_prev.FUN()
Get previous function
get_weekly_local()
Extract and plot information of local and weekly estimates from simulation
infection.FUN()
Infection function
init_seiqhrf()
Initial Conditions for Stochastic Individual Contact Models
init_status.icm()
Initialize status of ICM
initialize.FUN()
Initialize ICM
merge(<seiqhrf.icm>)
Merge icm
param_seiqhrf()
Epidemic Parameters for Stochastic Individual Contact Models
plot(<list>)
Plot simulation result given list
plot(<seiqhrf>)
Plot simulation result
plot_models()
Plot models
plot_sirplus()
Wrapper for primary sirplus plotting function
plot_times()
Plot compartment duration distributions
recovery.FUN()
Progress icm
saveout_seiqhrf()
Save icm
seiqhrf()
SEIQHRF function
simulate_seiqhrf()
SEIQHRF Simulation Wrapper
summary(<seiqhrf>)
summary function
vary_param()
Generating time-dependent parameters