Plot simulation result given list

# S3 method for list
plot(
  x,
  comp_remove = "none",
  time_limit = 90,
  ci = TRUE,
  sep_compartments = FALSE,
  trans = FALSE,
  known = NULL,
  start_date = ymd("2020-03-21"),
  x_axis = "Days since beginning of epidemic",
  plot_title = "SEIQHRF",
  ...
)

Arguments

x

A list of seiqhrf objects returned from seiqhrf.

comp_remove

Compartments to remove. Suggest c(s.num, r.num)

time_limit

Number of steps (days) to plot.

ci

T/F to include 95% confidence intervals in sirplus plot.

sep_compartments

T/F use faceting to show each compartment in a separate plot, only works if plotting a single simulation.

trans

Y-axis transformation (e.g. log2, log10). Default = none.

known

Dataframe with known compartment numbers to plot alongside projections

start_date

Date for day 0. Default: ymd("2020-03-21"),

x_axis

Title for x-axis. Default: 'Days since beginning of epidemic'

plot_title

Title for whole plot. Default: 'SEIQHRF plot'

...

Additional parameters