All functions

add_known()

Add known counts to sims dataframe for ggplot

arrivals.FUN()

Arrivals function

as.data.frame(<seiqhrf>)

Extract Model Data for Stochastic Models

control_seiqhrf()

Control Settings for Stochastic Individual Contact Models

cum_discr_si()

Sample value from Weibull distribution

departures.FUN()

Departures function

format_sims()

Format seiqhrf objects into dataframe for ggplot

get_ci()

Get 95% confidence intervals

get_prev.FUN()

Get previous function

get_weekly_local()

Extract and plot information of local and weekly estimates from simulation

infection.FUN()

Infection function

init_seiqhrf()

Initial Conditions for Stochastic Individual Contact Models

init_status.icm()

Initialize status of ICM

initialize.FUN()

Initialize ICM

merge(<seiqhrf.icm>)

Merge icm

param_seiqhrf()

Epidemic Parameters for Stochastic Individual Contact Models

plot(<list>)

Plot simulation result given list

plot(<seiqhrf>)

Plot simulation result

plot_models()

Plot models

plot_sirplus()

Wrapper for primary sirplus plotting function

plot_times()

Plot compartment duration distributions

recovery.FUN()

Progress icm

saveout_seiqhrf()

Save icm

seiqhrf()

SEIQHRF function

simulate_seiqhrf()

SEIQHRF Simulation Wrapper

summary(<seiqhrf>)

summary function

vary_param()

Generating time-dependent parameters