diff --git a/src/sgcocaller.nim b/src/sgcocaller.nim index 580fe19af060cba1009cbccb820efbb4c43e77dc..49bcfa980efeefd7447d544a1346ec172c761e45 100755 --- a/src/sgcocaller.nim +++ b/src/sgcocaller.nim @@ -5,16 +5,16 @@ import strutils import hts import tables import sequtils -import private/utils +import sgcocaller/utils import math import streams -import private/graph -import private/findPath -import private/getGtMtx -import private/sgphase -import private/writeVCF -import private/correctPhase -import private/sgcocaller_sxo +import sgcocaller/graph +import sgcocaller/findPath +import sgcocaller/getGtMtx +import sgcocaller/sgphase +import sgcocaller/writeVCF +import sgcocaller/correctPhase +import sgcocaller/sgcocaller_sxo let initProb:array[stateRef..stateAlt, float]=[0.5,0.5] diff --git a/src/private/correctPhase b/src/sgcocaller/correctPhase similarity index 100% rename from src/private/correctPhase rename to src/sgcocaller/correctPhase diff --git a/src/private/correctPhase.nim b/src/sgcocaller/correctPhase.nim similarity index 100% rename from src/private/correctPhase.nim rename to src/sgcocaller/correctPhase.nim diff --git a/src/private/findGtNodes.nim b/src/sgcocaller/findGtNodes.nim similarity index 100% rename from src/private/findGtNodes.nim rename to src/sgcocaller/findGtNodes.nim diff --git a/src/private/findPath.nim b/src/sgcocaller/findPath.nim similarity index 100% rename from src/private/findPath.nim rename to src/sgcocaller/findPath.nim diff --git a/src/private/findTemplateCell.nim b/src/sgcocaller/findTemplateCell.nim similarity index 100% rename from src/private/findTemplateCell.nim rename to src/sgcocaller/findTemplateCell.nim diff --git a/src/private/getGtMtx.nim b/src/sgcocaller/getGtMtx.nim similarity index 100% rename from src/private/getGtMtx.nim rename to src/sgcocaller/getGtMtx.nim diff --git a/src/private/graph.nim b/src/sgcocaller/graph.nim similarity index 100% rename from src/private/graph.nim rename to src/sgcocaller/graph.nim diff --git a/src/private/inferMissingSnps.nim b/src/sgcocaller/inferMissingSnps.nim similarity index 100% rename from src/private/inferMissingSnps.nim rename to src/sgcocaller/inferMissingSnps.nim diff --git a/src/private/sgcocaller_sxo b/src/sgcocaller/sgcocaller_sxo similarity index 100% rename from src/private/sgcocaller_sxo rename to src/sgcocaller/sgcocaller_sxo diff --git a/src/private/sgcocaller_sxo.nim b/src/sgcocaller/sgcocaller_sxo.nim similarity index 100% rename from src/private/sgcocaller_sxo.nim rename to src/sgcocaller/sgcocaller_sxo.nim diff --git a/src/private/sgphase b/src/sgcocaller/sgphase similarity index 100% rename from src/private/sgphase rename to src/sgcocaller/sgphase diff --git a/src/private/sgphase.nim b/src/sgcocaller/sgphase.nim similarity index 100% rename from src/private/sgphase.nim rename to src/sgcocaller/sgphase.nim diff --git a/src/private/utils.nim b/src/sgcocaller/utils.nim similarity index 100% rename from src/private/utils.nim rename to src/sgcocaller/utils.nim diff --git a/src/private/writeVCF.nim b/src/sgcocaller/writeVCF.nim similarity index 100% rename from src/private/writeVCF.nim rename to src/sgcocaller/writeVCF.nim diff --git a/src/private/write_out_vcf b/src/sgcocaller/write_out_vcf similarity index 100% rename from src/private/write_out_vcf rename to src/sgcocaller/write_out_vcf