From bd8bea22f69905ec105a41fe48d721b2f6c7b716 Mon Sep 17 00:00:00 2001
From: Ruqian Lyu <rlyu@svi.edu.au>
Date: Tue, 8 Mar 2022 11:36:04 +1100
Subject: [PATCH] Update README.md

---
 README.md | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/README.md b/README.md
index 7a69864..430300e 100644
--- a/README.md
+++ b/README.md
@@ -53,14 +53,12 @@ Arguments:
 
   <BAM> the read alignment file with records of single-cell DNA reads
 
-  <VCF> the variant call file with records of SNPs
+  <VCF> the variant call file with records of SNPs with hetSNPs phased in the form of REF/ALT or the GT field
 
   <barcodeFile> the text file containing the list of cell barcodes
 
   <out_prefix>  the prefix of output files
 
-  <fmf> the fragment file from running sgcocaller fmf
-
   <out_vcf> the output vcf aftering phasing blocks in hapfile
 
 
-- 
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