diff --git a/Dockerfile b/Dockerfile index b509790f76833b573cc07a84e274c45f11051ed2..40dfdea491c5b30872f4eebf1c4388d2c2efd03a 100644 --- a/Dockerfile +++ b/Dockerfile @@ -67,11 +67,14 @@ RUN \ ENV HTSLIB=system ENV PATH=$PATH:~/.cargo/bin/ -ADD . /src/ +RUN + git clone https://gitlab.svi.edu.au/biocellgen-public/sgcocaller.git && \ + cd sgcocaller && \ + nimble install . +#ADD . /src/ -RUN nimble install --help +#RUN nimble install -y https://gitlab.svi.edu.au/biocellgen-public/sgcocaller.git -RUN nimble install -y https://gitlab.svi.edu.au/biocellgen-public/sgcocaller.git #RUN ls ~/.nimble/lib/ ENV LD_LIBRARY_PATH=:/root/.nimble/lib/:/usr/local/lib/:$LD_LIBRARY_PATH