From 1a81c87da06e7670ed36985c2cdb793781b92427 Mon Sep 17 00:00:00 2001 From: rlyu <rlyu@svi.edu.au> Date: Mon, 10 Jan 2022 23:22:30 +1100 Subject: [PATCH] v.3.6 fix argument parsing bug --- src/sgcocaller.nim | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/sgcocaller.nim b/src/sgcocaller.nim index a4f9b21..be39ba3 100755 --- a/src/sgcocaller.nim +++ b/src/sgcocaller.nim @@ -140,8 +140,8 @@ Options: --lookBeyondSnps <lookBeyondSnps> the number of local SNPs to use when finding switch positions [default: 25] --minSwitchScore <minSwitchScore> the minimum switch score for a site to be identified as having a switch error in the inferred haplotype [default: 50.0] --minPositiveSwitchScores <minPositiveSwitchScores> the min number of continuing SNPs with positive switch scores to do switch error correction [default: 8] - --binSize <binSize> the size of SNP bins for scanning swith errors, users are recommended to increase this option when SNP density is high. [default 2000] - --stepSize <stepSize> the move step size used in combination with --binSize. [default 200] + --binSize <binSize> the size of SNP bins for scanning swith errors, users are recommended to increase this option when SNP density is high. [default: 2000] + --stepSize <stepSize> the move step size used in combination with --binSize. [default: 200] -h --help show help -- GitLab