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Jeffrey Pullin authoredJeffrey Pullin authored
about.html 14.21 KiB
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<div class="container-fluid main-container">
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
<div class="container">
<div class="navbar-header">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
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<a class="navbar-brand" href="index.html">MAGE_2020_Marker-Gene-Benchmarking</a>
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<li>
<a href="index.html">Home</a>
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<a href="about.html">About</a>
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<a href="https://gitlab.svi.edu.au/biocellgen-private/mage_2020_marker-gene-benchmarking">
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<h1 class="title toc-ignore">About</h1>
</div>
<p>
<button type="button" class="btn btn-default btn-workflowr btn-workflowr-report" data-toggle="collapse" data-target="#workflowr-report">
<span class="glyphicon glyphicon-list" aria-hidden="true"></span> workflowr <span class="glyphicon glyphicon-ok text-success" aria-hidden="true"></span>
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<a data-toggle="tab" href="#versions">Past versions</a>
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<p>
<strong>Last updated:</strong> 2021-02-16
</p>
<p>
<strong>Checks:</strong> <span class="glyphicon glyphicon-ok text-success" aria-hidden="true"></span> 2 <span class="glyphicon glyphicon-exclamation-sign text-danger" aria-hidden="true"></span> 0
</p>
<p>
<strong>Knit directory:</strong> <code>mage_2020_marker-gene-benchmarking/</code> <span class="glyphicon glyphicon-question-sign" aria-hidden="true" title="This is the local directory in which the code in this file was executed."> </span>
</p>
<p>This reproducible <a href="http://rmarkdown.rstudio.com">R Markdown</a> analysis was created with <a
href="https://github.com/jdblischak/workflowr">workflowr</a> (version 1.6.2). The <em>Checks</em> tab describes the reproducibility checks that were applied when the results were created. The <em>Past versions</em> tab lists the development history.
</p>
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<div class="panel panel-default">
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<p class="panel-title">
<a data-toggle="collapse" data-parent="#workflowr-checks" href="#strongRMarkdownfilestronguptodate"> <span class="glyphicon glyphicon-ok text-success" aria-hidden="true"></span> <strong>R Markdown file:</strong> up-to-date </a>
</p>
</div>
<div id="strongRMarkdownfilestronguptodate" class="panel-collapse collapse">
<div class="panel-body">
<p>Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.</p>
</div>
</div>
</div>
<div class="panel panel-default">
<div class="panel-heading">
<p class="panel-title">
<a data-toggle="collapse" data-parent="#workflowr-checks" href="#strongRepositoryversionstrongahrefhttpsgitlabsvieduaubiocellgenprivatemage2020markergenebenchmarkingtree63bce665856cac94a540db0429dc46bfbb659270targetblank63bce66a"> <span class="glyphicon glyphicon-ok text-success" aria-hidden="true"></span> <strong>Repository version:</strong> <a href="https://gitlab.svi.edu.au/biocellgen-private/mage_2020_marker-gene-benchmarking/tree/63bce665856cac94a540db0429dc46bfbb659270" target="_blank">63bce66</a> </a>
</p>
</div>
<div id="strongRepositoryversionstrongahrefhttpsgitlabsvieduaubiocellgenprivatemage2020markergenebenchmarkingtree63bce665856cac94a540db0429dc46bfbb659270targetblank63bce66a" class="panel-collapse collapse">
<div class="panel-body">
<p>
Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.
</p>
<p>
The results in this page were generated with repository version <a href="https://gitlab.svi.edu.au/biocellgen-private/mage_2020_marker-gene-benchmarking/tree/63bce665856cac94a540db0429dc46bfbb659270" target="_blank">63bce66</a>. See the <em>Past versions</em> tab to see a history of the changes made to the R Markdown and HTML files.
</p>
<p>
Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use <code>wflow_publish</code> or <code>wflow_git_commit</code>). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:
</p>
<pre><code>
Ignored files:
Ignored: .RData
Ignored: .Rhistory
Ignored: .Rproj.user/
Ignored: .snakemake/
Ignored: config/
Ignored: data/sim_data/
Ignored: logs/
Ignored: results/
</code></pre>
<p>
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
</p>
</div>
</div>
</div>
</div>
<hr>
</div>
<div id="versions" class="tab-pane fade">
<p>
These are the previous versions of the repository in which changes were made to the R Markdown (<code>analysis/about.Rmd</code>) and HTML (<code>public/about.html</code>) files. If you’ve configured a remote Git repository (see <code>?wflow_git_remote</code>), click on the hyperlinks in the table below to view the files as they were in that past version.
</p>
<div class="table-responsive">
<table class="table table-condensed table-hover">
<thead>
<tr>
<th>
File
</th>
<th>Version
</th>
<th>
Author
</th>
<th>
Date
</th>
<th>
Message
</th>
</tr>
</thead>
<tbody>
<tr>
<td>
html
</td>
<td>
<a href="https://gitlab.svi.edu.au/biocellgen-private/mage_2020_marker-gene-benchmarking/blob/2863555c1b0ccc7c310f34dc03f5a1b37670b576/public/about.html" target="_blank">2863555</a>
</td>
<td>
Jeffrey Pullin
</td>
<td>
2021-02-10
</td>
<td>
Build site.
</td>
</tr>
<tr>
<td>
Rmd
</td>
<td>
<a href="https://gitlab.svi.edu.au/biocellgen-private/mage_2020_marker-gene-benchmarking/blob/1ad9d6de2a37fd0860c0aed0d70faa3221788cb7/analysis/about.Rmd" target="_blank">1ad9d6d</a>
</td>
<td>
Jeffrey Pullin
</td>
<td>
2021-02-10
</td>
<td>
Add workflowr website
</td>
</tr>
<tr>
<td>
Rmd
</td>
<td>
<a href="https://gitlab.svi.edu.au/biocellgen-private/mage_2020_marker-gene-benchmarking/blob/7971ea23851da6cfe3cf9271f03e75a5cda465bd/analysis/about.Rmd" target="_blank">7971ea2</a>
</td>
<td>
Jeffrey Pullin
</td>
<td>
2020-10-25
</td>
<td>
Initial commit
</td>
</tr>
</tbody>
</table>
</div>
<hr>
</div></div>
</div>
<p>TODO</p>
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