Commit fd76c480 authored by Davis McCarthy's avatar Davis McCarthy
Browse files

Bugfix to snakemake workflow

parent 763610b4
......@@ -99,7 +99,7 @@ rule bismark:
output:
temp('data/bismark/raw/{sample}_trimmed_bismark_bt2.bam') ## CHECK BISMARK OUTPUT
params:
basename=expand('data/bismark/raw/{sample_short}_trimmed_bismark_bt2', sample_short=wildcards.sample)
basename='data/bismark/raw/{sample}_trimmed_bismark_bt2'
singularity:
"docker://dmccarthy/embo-singlecellomics-methylation_2019-05_heidelberg:0.4"
shell:
......
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