Commit f56d8719 authored by Davis McCarthy's avatar Davis McCarthy
Browse files

Bugfix to snakemake workflow

parent 9cc8a073
......@@ -95,7 +95,7 @@ rule bismark_prepare_genome:
rule bismark:
input:
fq=lambda wildcards: expand('data/fastq/{sample_long}_trimmed.fq.gz', sample_long=SAMPLES_DICT[wildcards.sample])
fq=lambda wildcards: expand('data/fastq/{sample_long}_trimmed.fq.gz', sample_long=SAMPLES_DICT[wildcards.sample]),
gn='genome/Bisulfite_Genome'
output:
temp('data/bismark/raw/{sample}_trimmed_bismark_bt2.bam') ## CHECK BISMARK OUTPUT
......
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