Commit ba662a45 authored by Davis McCarthy's avatar Davis McCarthy
Browse files

Fixing bug in Snakefile

parent 1723beab
......@@ -127,8 +127,8 @@ rule multiqc:
input:
fastqc_html_reports,
expand('data/bismark/methyl/{sample}_trimmed_bismark_bt2.deduplicated.bismark.cov.gz', sample = SAMPLES),
expand('{sample}_trimmed.fq.gz', sample = SAMPLES),
expand('{sample}.fastq.gz_trimming_report.txt', sample = SAMPLES)
expand('data/fastq/{sample}_trimmed.fq.gz', sample = SAMPLES),
expand('data/fastq/{sample}.fastq.gz_trimming_report.txt', sample = SAMPLES)
output:
'reports/multiqc/multiqc_report.html'
singularity:
......
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