Commit 72293a69 authored by Davis McCarthy's avatar Davis McCarthy
Browse files

Updated snakefile

parent cf485f19
......@@ -16,7 +16,7 @@ import os
import re
SAMPLES_LONG = glob.glob('data/fastq/*.fastq.gz')
SAMPLES_LONG = [re.sub('.*lane[123]+_', '', w) for w in SAMPLES_LONG]
#SAMPLES_LONG = [re.sub('.*lane[123]+_', '', w) for w in SAMPLES_LONG]
SAMPLES = [re.sub('.*lane[123]+_', '', w) for w in SAMPLES_LONG]
SAMPLES = [re.sub('_[ATCG]+_.*_(R[12]).fastq.gz', '_\\1', w) for w in SAMPLES]
SAMPLES_LONG = [os.path.basename(w).replace('.fastq.gz', '') for w in SAMPLES_LONG]
......
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