Commit 4cc4ab1f authored by Davis McCarthy's avatar Davis McCarthy
Browse files

Bugfix to snakemake workflow

parent fd76c480
......@@ -97,7 +97,8 @@ rule bismark:
fq=lambda wildcards: expand('data/fastq/{sample_long}_trimmed.fq.gz', sample_long=SAMPLES_DICT[wildcards.sample]),
gn='genome/Bisulfite_Genome'
output:
temp('data/bismark/raw/{sample}_trimmed_bismark_bt2.bam') ## CHECK BISMARK OUTPUT
temp('data/bismark/raw/{sample}_trimmed_bismark_bt2.bam'), ## CHECK BISMARK OUTPUT
temp('data/bismark/raw/{sample}_trimmed_bismark_bt2_SE_report.txt')
params:
basename='data/bismark/raw/{sample}_trimmed_bismark_bt2'
singularity:
......
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