Commit a5ae0214 authored by Ruqian Lyu's avatar Ruqian Lyu
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add index page

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......@@ -23,5 +23,7 @@ Starting with the expression counts matrix, this workshop will cover the followi
1. Marker gene/cell annotation
Webpages:
https://biocellgen-private.svi.edu.au/amsi_day1-hands-on-scrnaseq-analysis-workshop-2020-11-30_svi/public/index.html
---
title: "BioInfoSummer Single-cell RNA-seq analysis workshop"
site: workflowr::wflow_site
output:
workflowr::wflow_html:
toc: true
---
```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
```
## Introduction
In this workshop, we will introduce the data infrastructure for scRNAseq analysis
in R and practice a workflow of scRNAseq analysis; from pre-processing, quality
control to dimensionality reduction aand clustering. We will then demonstrate the
usage of marker genes for cell type annotation and an automatic approach for matching
query cells to a reference altas with labels.
1. [single-cell RNAseq analysis workflow for cell type identification](BIOS_analysis-workflow.html)
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