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---
title: "BioInfoSummer Single-cell RNA-seq analysis workshop"
site: workflowr::wflow_site
output:
  workflowr::wflow_html:
    toc: true
---

```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
```

##  Introduction   

In this workshop, we will introduce the data infrastructure for scRNAseq analysis 
in R and practice a workflow of scRNAseq analysis; from pre-processing, quality
control to dimensionality reduction aand clustering. We will then demonstrate the
usage of marker genes for cell type annotation and an automatic approach for matching
query cells to a reference altas with labels. 


1. [single-cell RNAseq analysis workflow for cell type identification](BIOS_analysis-workflow.html)